>SSC643 (SSC643Q) /CSM/SS/SSC6-B/SSC643Q.Seq.d/
XXXXXXXXXXAAAAGGTGCACGTAATGTTGTAAGACAAGTATGTGCTGGTGTTGAATATC
TCCATTCACAAGGTATTGCTCATAGAGATTTGAAACCAGAGAATTTATTATGTAATGGTG
AAGGTGAAGATATGACAATCAAAATTGCAGATTTTGGTCTTAGTAAAATATTTGGAACTG
GTGAAGCATTGGAAACAAGTTGTGGTACACCAGATTATGTTGCACCAGAAGTTTTAACTG
GTGGTTCATATGATAATGCAGTCGATATGTGGTCAATTGGTGTCATTACCTATATTTTAT
TATGTGGTTTCCCACCATTCTATGCTTCATCTCAAAACTTATTATTTGAAAAAATTTTAA
CCGCTGATTATGATTTCCCAGAACCAGAATGGACTCATGTCTCTGAACATGCCAAAGCTT
TCATTAGAAACTTAATTGTCAAAGATCCAGATCAACGTCATACTGCCAAACAATGTCTTG
ATGACCTTTGGCTCTCTGGTAGTGATCAATCAATTGGTTCTGCTGCTGATCTCCACTCTC
ATTTCGCTGAAAAGATGAAGAAATATAATGACCAAAGAAGAGGTGGTCAATC

---KGARNVVRQVCAGVEYLHSQGIAHRDLKPENLLCNGEGEDMTIKIADFGLSKIFGTG
EALETSCGTPDYVAPEVLTGGSYDNAVDMWSIGVITYILLCGFPPFYASSQNLLFEKILT
ADYDFPEPEWTHVSEHAKAFIRNLIVKDPDQRHTAKQCLDDLWLSGSDQSIGSAADLHSH
FAEKMKKYNDQRRGGQ

Frame A:
---KGARNVVRQVCAGVEYLHSQGIAHRDLKPENLLCNGEGEDMTIKIADFGLSKIFGTG
EALETSCGTPDYVAPEVLTGGSYDNAVDMWSIGVITYILLCGFPPFYASSQNLLFEKILT
ADYDFPEPEWTHVSEHAKAFIRNLIVKDPDQRHTAKQCLDDLWLSGSDQSIGSAADLHSH
FAEKMKKYNDQRRGGQ


Frame B:
---kvhvml*dkyvlvlnisihkvlliei*nqriyyvmvkvki*qsklqilvlvkylelv
khwkqvvvhqimlhqkf*lvvhmimqsicgqlvslpifyyvvshhsmlhlktyylkkf*p
limisqnqnglmslnmpklslet*lskiqinvilpnnvlmtfgslvvinqlvlllistli
slkr*rnimtkeevvn


Frame C:
---rct*ccktsmcwc*ispftrycs*rfetrefim*w*r*rydnqncrfws**niwnw*
signklwytrlcctrsfnwwfi**csryvvnwchylyfimwfptilcfisklii*knfnr
*l*fprtrmdscl*tcqsfh*klncqrsrstsycqtms**plalw**sinwfcc*splsf
r*kdeei**pkkrwsi

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI101 (SSI101Q) /CSM/SS/SSI1-A/SSI101Q.Seq.d/                       1154   0.0
SSC643 (SSC643Q) /CSM/SS/SSC6-B/SSC643Q.Seq.d/                       1154   0.0
SLC252 (SLC252Q) /CSM/SL/SLC2-C/SLC252Q.Seq.d/                       1112   0.0
VFG381 (VFG381Q) /CSM/VF/VFG3-D/VFG381Q.Seq.d/                       1084   0.0
SFK820 (SFK820Q) /CSM/SF/SFK8-A/SFK820Q.Seq.d/                       1084   0.0
VFG501 (VFG501Q) /CSM/VF/VFG5-A/VFG501Q.Seq.d/                       1080   0.0
VFJ379 (VFJ379Q) /CSM/VF/VFJ3-D/VFJ379Q.Seq.d/                       1076   0.0
AFL780 (AFL780Q) /CSM/AF/AFL7-D/AFL780Q.Seq.d/                       1068   0.0
CFB218 (CFB218Q) /CSM/CF/CFB2-A/CFB218Q.Seq.d/                       1037   0.0
SFH150 (SFH150Q) /CSM/SF/SFH1-C/SFH150Q.Seq.d/                       1033   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.  1154  0.0  1
M64176|M64176.1 D.discoideum myosin light chain kinase (MLCK) mRNA, complete cds.    84  2e-24  3
AZ667950|AZ667950.1 ENTFN88TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52  5e-15  3
AZ545332|AZ545332.1 ENTGA35TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52  4e-11  3
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    50  1e-07  8
BH137166|BH137166.1 ENTNR83TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52  7e-07  2
AZ672839|AZ672839.1 ENTIX25TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52  9e-07  2
AU083681|AU083681.1 Cryptomeria japonica mRNA, clone:CC0359, 5' end, expressed in inner bark.    44  7e-06  3
AZ930615|AZ930615.1 474.dhz56f04.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz56f04.s1, DNA sequence.    42  2e-05  3
BP190282|BP190282.1 Dugesia japonica cDNA, clone: 04589_HH, expressed in the head.    60  3e-05  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q869W6) RecName: Full=Probable calcium/calmodulin-dependent ser...   403   e-111
AC116982_54(AC116982|pid:none) Dictyostelium discoideum chromoso...   212   5e-54
AB076903_1(AB076903|pid:none) Ciona intestinalis Ci-CaM-K mRNA f...   196   3e-49
BC074183_1(BC074183|pid:none) Xenopus laevis MGC82022 protein, m...   192   4e-48
AK052401_1(AK052401|pid:none) Mus musculus 13 days embryo lung c...   191   1e-47
(Q8IU85) RecName: Full=Calcium/calmodulin-dependent protein kina...   191   1e-47
BC110966_1(BC110966|pid:none) Xenopus laevis calcium/calmodulin-...   191   1e-47
AY335686_1(AY335686|pid:none) Synthetic construct Homo sapiens C...   191   1e-47
(Q8BW96) RecName: Full=Calcium/calmodulin-dependent protein kina...   191   1e-47
BC041721_1(BC041721|pid:none) Xenopus laevis calcium/calmodulin-...   189   5e-47

 psg: 0.72  gvh: 0.34  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SSC643 is cyt

>SSC643Z.Seq
----------AAAAGGTGCACGTAATGTTGTAAGACAAGTATGTGCTGGTGTTGAATATC
TCCATTCACAAGGTATTGCTCATAGAGATTTGAAACCAGAGAATTTATTATGTAATGGTG
AAGGTGAAGATATGACAATCAAAATTGCAGATTTTGGTCTTAGTAAAATATTTGGAACTG
GTGAAGCATTGGAAACAAGTTGTGGTACACCAGATTATGTTGCACCAGAAGTTTTAACTG
GTGGTTCATATGATAATGCAGTCGATATGTGGTCAATTGGTGTCATTACCTATATTTTAT
TATGTGGTTTCCCACCATTCTATGCTTCATCTCAAAACTTATTATTTGAAAAAATTTTAA
CCGCTGATTATGATTTCCCAGAACCAGAATGGACTCATGTCTCTGAACATGCCAAAGCTT
TCATTAGAAACTTAATTGTCAAAGATCCAGATCAACGTCATACTGCCAAACAATGTCTTG
ATGACCTTTGGCTCTCTGGTAGTGATCAATCAATTGGTTCTGCTGCTGATCTCCACTCTC
ATTTCGCTGAAAAGATGAAGAAATATAATGACCAAAGAAGAGGTGGTCAATC