>SSC635 (SSC635Q) /CSM/SS/SSC6-B/SSC635Q.Seq.d/
ATCATCGTCATCATAAATAAAAAAAAAAAAAACCAACAATAACAACAACAACAACAACAA
CAACAACATCAACAACAACAACAACAACAACCACAAAATAATTATAATATAAAAGATGAT
TCCTCTGATGAATCAATGGAGATGGAAGATATGAGTGGTGCTAATGTACGTAGTCAATAA
AAAAAAAAAACAACAAAAAAAAAAAGTTAAAAAAAGAAGGCATCATTCGAATGTAGAGTT
CAATCAAGCATTAGAATTTAATGATAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAA
AAANGAAAAAAAAAAAGGAAAAAAANGAAAAAAAAAAAAAAAGGAAAAAAAAAAATTCTT
TGGTTTTTTCCTTTTTTCCCCAAAATTAAATTAATTAAAXXXXXXXXXX

ssss*ikkkktnnnnnnnnnnninnnnnnnhkiiii*kmiplmnqwrwki*VVLMYVVNK
KKKQQKKKVKKRRHHSNVEFNQALEFNDKKKKKKKKKKKKXEKKKGKKXKKKKKEKKKFF
GFFLFSPKLN*l---

Frame A:
iiviinkkkknqq*qqqqqqqqhqqqqqqqpqnnynikddssdesmemedmsganvrsq*
kkkttkkks*kkkasfecrvqssiri***kkkkkkkkekkkxkkkrkkxkkkkkgkkkil
wffpffpkikli---


Frame B:
ssss*ikkkktnnnnnnnnnnninnnnnnnhkiiii*kmiplmnqwrwki*VVLMYVVNK
KKKQQKKKVKKRRHHSNVEFNQALEFNDKKKKKKKKKKKKXEKKKGKKXKKKKKEKKKFF
GFFLFSPKLN*l---


Frame C:
hrhhk*kkkkptitttttttttsttttttttk*l*ykr*fl**ingdgryewc*ct*sik
kknnkkkklkkegiirm*ssikh*nlmikkkkkkkkrkkkxkkkkekxekkkkrkkknsl
vfsffpqn*in*---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM839 (SSM839Q) /CSM/SS/SSM8-B/SSM839Q.Seq.d/                        172   3e-42
SSK748 (SSK748Q) /CSM/SS/SSK7-B/SSK748Q.Seq.d/                        172   3e-42
SSC635 (SSC635Q) /CSM/SS/SSC6-B/SSC635Q.Seq.d/                        172   3e-42
SSM879 (SSM879Q) /CSM/SS/SSM8-D/SSM879Q.Seq.d/                        159   4e-38
SSL712 (SSL712Q) /CSM/SS/SSL7-A/SSL712Q.Seq.d/                        100   3e-20
SFI822 (SFI822Q) /CSM/SF/SFI8-A/SFI822Q.Seq.d/                         68   1e-10
AFM790 (AFM790Q) /CSM/AF/AFM7-D/AFM790Q.Seq.d/                         50   3e-05
VHN344 (VHN344Q) /CSM/VH/VHN3-B/VHN344Q.Seq.d/                         38   0.10
CHQ852 (CHQ852Q) /CSM/CH/CHQ8-C/CHQ852Q.Seq.d/                         38   0.10
CHG179 (CHG179Q) /CSM/CH/CHG1-D/CHG179Q.Seq.d/                         38   0.10

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC093301|AC093301.3 Homo sapiens chromosome 5 clone RP11-565F4, complete sequence.    46  0.088  3
AC017105|AC017105.5 Homo sapiens chromosome 5 clone RP11-565F4, WORKING DRAFT SEQUENCE, 25 unordered pieces.    46  0.33  1
AY206784|AY206784.1 Sterictiphora furcata 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.    34  0.39  2
BH921168|BH921168.1 odg89g06.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    34  0.77  2
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    36  1.1  2
AL672261|AL672261.5 Mouse DNA sequence *** SEQUENCING CANCELLED *** from clone  RP23-11G17.    40  1.1  2
AC009185|AC009185.6 Homo sapiens chromosome 5 clone CTC-248O19, complete sequence.    44  1.3  1
AL408276|AL408276.1 T3 end of clone AV0AA007E09 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    44  1.3  1
BY498701|BY498701.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830057F15, 3' end partial sequence.    44  1.3  1
AC008389|AC008389.4 Homo sapiens chromosome 5 clone CTC-232D5, complete sequence.    44  3.8  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 248,490,273

 psg: 0.24  gvh: 0.09  alm: 0.67  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.05
 nuc: 1.91  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SSC635 is nuc

>SSC635F.Seq
ATCATCGTCATCATAAATAAAAAAAAAAAAAACCAACAATAACAACAACAACAACAACAA
CAACAACATCAACAACAACAACAACAACAACCACAAAATAATTATAATATAAAAGATGAT
TCCTCTGATGAATCAATGGAGATGGAAGATATGAGTGGTGCTAATGTACGTAGTCAATAA
AAAAAAAAAACAACAAAAAAAAAAAGTTAAAAAAAGAAGGCATCATTCGAATGTAGAGTT
CAATCAAGCATTAGAATTTAATGATAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAA
AAANGAAAAAAAAAAAGGAAAAAAANGAAAAAAAAAAAAAAAGGAAAAAAAAAAATTCTT
TGGTTTTTTCCTTTTTTCCCCAAAATTAAATTAATTAAA