>SSC615 (SSC615Q) /CSM/SS/SSC6-A/SSC615Q.Seq.d/
AAAAAAAAATGTCAGAACCAGTTAATAAAGTAAAACAAACTCAACAACAAGTTGATGATG
TTACAAATACCATGCACATTGCAGTTGGTAAAATGTTAGATAATCAACAAAAAGTTTCAG
AATTAACAGATAAGAGTGAAAATATGAAACAAGGTGCTCAACAATTCAAAAAGAAGACTA
ATGAAATCAAACGTTTAATGTGGTGTAGAAATATAAAACTTACTCTTATCATTATTGCAG
TAGTTGTGCTCTTATTGGTTGTTATTATTGTACCAATTGTTCTCAAATTTACATAAATCA
ATTTAAAAAAAGGAAAAACAACATTAATATATATATTTAAGAATTCAAAAAATTAAAAAA
AAAAAAAAAAAGTTATAACTCAAAATAATAAATAAGTAATAATAACCAAAAAAAAAAAAA
GAAACAAATAATAACTAGTAGCAAATAATAAATAATAATAATAAXXXXXXXXXX

KKMSEPVNKVKQTQQQVDDVTNTMHIAVGKMLDNQQKVSELTDKSENMKQGAQQFKKKTN
EIKRLMWCRNIKLTLIIIAVVVLLLVVIIVPIVLKFT*inlkkgkttliyifknskn*kk
kkkvitqnnk*viitkkkkrnk**lvannk***---

Frame A:
kkkcqnqlik*nklnnklmmlqipctlqlvkc*iinkkfqn*qirvki*nkvlnnskrrl
mksnv*cgvei*nlllsllq*lcsywllllyqlfsnlhksi*kkekqh*yiylriqkikk
kkkkl*lkiink***pkkkketnnn**qiinnnn---


Frame B:
kknvrts**sktnstts**cykyhahcsw*nvr*stksfrinr*e*kyetrcstiqked*
*nqtfnvv*kyktysyhycsscaligcyyctncsqiyinqfkkrknniniyi*efkklkk
kkksynsk**isnnnqkkkkkqiitssk**iiii---


Frame C:
KKMSEPVNKVKQTQQQVDDVTNTMHIAVGKMLDNQQKVSELTDKSENMKQGAQQFKKKTN
EIKRLMWCRNIKLTLIIIAVVVLLLVVIIVPIVLKFT*inlkkgkttliyifknskn*kk
kkkvitqnnk*viitkkkkrnk**lvannk***---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM735 (SSM735Q) /CSM/SS/SSM7-B/SSM735Q.Seq.d/                        571   e-162
SSM718 (SSM718Q) /CSM/SS/SSM7-A/SSM718Q.Seq.d/                        571   e-162
SSM361 (SSM361Q) /CSM/SS/SSM3-C/SSM361Q.Seq.d/                        571   e-162
SSK783 (SSK783Q) /CSM/SS/SSK7-D/SSK783Q.Seq.d/                        571   e-162
SSK419 (SSK419Q) /CSM/SS/SSK4-A/SSK419Q.Seq.d/                        571   e-162
SSH266 (SSH266Q) /CSM/SS/SSH2-C/SSH266Q.Seq.d/                        571   e-162
SSC615 (SSC615Q) /CSM/SS/SSC6-A/SSC615Q.Seq.d/                        571   e-162
SSJ122 (SSJ122Q) /CSM/SS/SSJ1-A/SSJ122Q.Seq.d/                        547   e-155
SSH785 (SSH785Q) /CSM/SS/SSH7-D/SSH785Q.Seq.d/                        531   e-150
SSB132 (SSB132Q) /CSM/SS/SSB1-B/SSB132Q.Seq.d/                        428   e-119

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC021203|AC021203.5 Homo sapiens chromosome 4 clone RP11-143E9, complete sequence.    46  0.39  1
AF046916|AF046916.1 Ruminococcus flavefaciens FD-1 glutamine synthetase type III (glnA) gene, complete cds.    46  0.39  1
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    40  0.42  7
AC093244|AC093244.2 Homo sapiens chromosome 5 clone RP11-113I22, complete sequence.    30  0.78  5
AC118716|AC118716.3 Mus musculus clone RP24-151E20, WORKING DRAFT SEQUENCE, 4 unordered pieces.    40  1.0  4
AC009177|AC009177.7 Arabidopsis thaliana chromosome III BAC T12H1 genomic sequence, complete sequence.    34  1.2  6
BH338903|BH338903.1 CH230-194M5.TV CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-194M5, DNA sequence.    44  1.5  1
BB307407|BB307407.2 Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230214G19, 3' end partial sequence.    44  1.5  1
BB049087|BB049087.2 Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430599N18, 3' end partial sequence.    44  1.5  1
AL929400|AL929400.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-175M24.    44  1.5  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GB3) RecName: Full=Synaptobrevin-B;                                53   3e-06
AF484091_1(AF484091|pid:none) Lymnaea stagnalis synaptobrevin is...    46   4e-04
AE013599_1084(AE013599|pid:none) Drosophila melanogaster chromos...    45   6e-04
AE013599_1083(AE013599|pid:none) Drosophila melanogaster chromos...    45   6e-04
AB077367_1(AB077367|pid:none) Halocynthia roretzi HrCellubrevin ...    45   0.001
(Q60WU2) RecName: Full=Synaptobrevin-1; AltName: Full=Synaptobre...    44   0.001
AE014296_328(AE014296|pid:none) Drosophila melanogaster chromoso...    44   0.001
AE014296_330(AE014296|pid:none) Drosophila melanogaster chromoso...    44   0.001
AE014296_326(AE014296|pid:none) Drosophila melanogaster chromoso...    44   0.001
(Q62442) RecName: Full=Vesicle-associated membrane protein 1;   ...    44   0.002

 psg: 0.43  gvh: 0.18  alm: 0.01  top: 0.33  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: nuclear
	 20.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSC615 is nuc

>SSC615F.Seq
AAAAAAAAATGTCAGAACCAGTTAATAAAGTAAAACAAACTCAACAACAAGTTGATGATG
TTACAAATACCATGCACATTGCAGTTGGTAAAATGTTAGATAATCAACAAAAAGTTTCAG
AATTAACAGATAAGAGTGAAAATATGAAACAAGGTGCTCAACAATTCAAAAAGAAGACTA
ATGAAATCAAACGTTTAATGTGGTGTAGAAATATAAAACTTACTCTTATCATTATTGCAG
TAGTTGTGCTCTTATTGGTTGTTATTATTGTACCAATTGTTCTCAAATTTACATAAATCA
ATTTAAAAAAAGGAAAAACAACATTAATATATATATTTAAGAATTCAAAAAATTAAAAAA
AAAAAAAAAAAGTTATAACTCAAAATAATAAATAAGTAATAATAACCAAAAAAAAAAAAA
GAAACAAATAATAACTAGTAGCAAATAATAAATAATAATAATAA----------