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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC604
Library SS
(Link to library)
Clone ID SSC604
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16255-1
Original site URL
Representative seq. ID SSC604Z
(Link to Original site)
Representative DNA sequence 
>SSC604 (SSC604Q) /CSM/SS/SSC6-A/SSC604Q.Seq.d/
XXXXXXXXXXAAAGGTACTTGCAAGACTGTTCAATGTCCAAAAGGTTACAAATGCAAACT
CTATGCTGATGGTCCAACATGTGTAAAGATTGAAAAACCAAAATGTCTCACTTGTAAAGA
TATGCATTGTGAGTCAAATGGATTACTCTGTGTCTTGACTCCACAAAAGAAGACTGATGA
AGAATGTTGTCCAATTATTCCAATCTGTATCAATCCATCAACTATTGCCGCATCCACTAT
TGCCACTACAACTGCATCAACTCGTCACTCAACTGCCTCAACAATTGCCTCATTAGTCAC
TGGTACCACAAGTGGTGGTGGTGGTATGGGTTCATTTGGTGGTCGATCCGATGAAGAATC
AAGTGANCCAAATGCTANACTTGGTCTCTTTGAAGACGATATTNTCTGGGGTGATAATGA
TGAATACTTTAGTGATAACTACCGTTATGTTGATGAAGAAGATATTGATGAAGATTTCAA
TGGTAATGATGAATTTGAAATTGATGTTGAAGGTGATTTCCAAGAAGATGATTTCGAAGA
AGAATATGCATTTTATTAAATTAAACTCTTTTTNNNNNNAAAATAATAATAATAATTTAA
TAACTAATCATTATCATCAATAATAACATTATAATATTACTTTAATAACAACACTTTTTT
TAATANTCAAAGACTTTACAAAAA
sequence update 1997. 9. 1
Translated Amino Acid sequence 
---GTCKTVQCPKGYKCKLYADGPTCVKIEKPKCLTCKDMHCESNGLLCVLTPQKKTDEE
CCPIIPICINPSTIAASTIATTTASTRHSTASTIASLVTGTTSGGGGMGSFGGRSDEESS
XPNAXLGLFEDDIXWGDNDEYFSDNYRYVDEEDIDEDFNGNDEFEIDVEGDFQEDDFEEE
YAFY*iklfxxxk****fnn*slssiitl*yyfnnntffnxqrlyk
Translated Amino Acid sequence (All Frames) 
Frame A:
---kvlarlfnvqkvtnansmlmvqhv*rlknqnvslvkicivsqmdysvs*lhkrrlmk
nvvqlfqsvsihqllphpllplqlhqlvtqlpqqlph*slvpqvvvvvwvhlvvdpmknq
vxqmlxlvslktixsgvimmntlvittvmlmkkilmkismvmmnlklmlkviskkmiskk
nmhfiklnsfxxxnnnnnlitnhyhq**hynitlittlflixkdftk


Frame B:
---rylqdcsmskrlqmqtlc*wsnmckd*ktkmshl*ryal*vkwitlcldstked**r
mlsnysnlyqsinycrihychyncinsslnclnnclishwyhkwwwwygfiwwsir*rik
*xkcxtwsl*rryxlg****il***lplc**rry**rfqw***i*n*c*r*fprr*frrr
icilln*tlfxxkiiiii**liiiinnniiill**qhff*xsktlqk


Frame C:
---GTCKTVQCPKGYKCKLYADGPTCVKIEKPKCLTCKDMHCESNGLLCVLTPQKKTDEE
CCPIIPICINPSTIAASTIATTTASTRHSTASTIASLVTGTTSGGGGMGSFGGRSDEESS
XPNAXLGLFEDDIXWGDNDEYFSDNYRYVDEEDIDEDFNGNDEFEIDVEGDFQEDDFEEE
YAFY*iklfxxxk****fnn*slssiitl*yyfnnntffnxqrlyk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC604 (SSC604Q) /CSM/SS/SSC6-A/SSC604Q.Seq.d/                       1088   0.0
SSM572 (SSM572Q) /CSM/SS/SSM5-C/SSM572Q.Seq.d/                       1086   0.0
SSJ101 (SSJ101Q) /CSM/SS/SSJ1-A/SSJ101Q.Seq.d/                       1086   0.0
SSF391 (SSF391Q) /CSM/SS/SSF3-D/SSF391Q.Seq.d/                       1086   0.0
SSC714 (SSC714Q) /CSM/SS/SSC7-A/SSC714Q.Seq.d/                       1086   0.0
SSC195 (SSC195Q) /CSM/SS/SSC1-D/SSC195Q.Seq.d/                       1086   0.0
SLE689 (SLE689Q) /CSM/SL/SLE6-D/SLE689Q.Seq.d/                       1086   0.0
SLE453 (SLE453Q) /CSM/SL/SLE4-C/SLE453Q.Seq.d/                       1086   0.0
SLA864 (SLA864Q) /CSM/SL/SLA8-C/SLA864Q.Seq.d/                       1086   0.0
SLA758 (SLA758Q) /CSM/SL/SLA7-C/SLA758Q.Seq.d/                       1086   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M26238|M26238.1 D.discoideum spore coat protein SP70 gene, complete cds.  1086  0.0  1
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.  1086  0.0  3
CA855068|CA855068.1 PfESToac46b06.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5', mRNA sequence.    50  0.036  1
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    50  0.081  3
AC099694|AC099694.12 Mus musculus, clone RP23-195D9, complete sequence.    48  0.14  1
BE217634|BE217634.1 MD0264 Meloidogyne incognita J2 (#MD99-1) Meloidogyne incognita cDNA clone 2993 5' similar to unknown Meloidogyne incognita cDNA, mRNA sequence.    48  0.14  1
CD951782|CD951782.1 SAY_66 GeneTag2 Zea mays cDNA, mRNA sequence.    48  0.14  1
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40  0.16  7
CC755907|CC755907.1 ZMMBBb0141C12.r ZMMBBb Zea mays subsp. mays genomic clone ZMMBBb0141C12 3', genomic survey sequence.    46  0.56  1
AG232038|AG232038.1 Lotus corniculatus var. japonicus DNA, clone:LjB22l20_f.    46  0.56  1
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...   221   2e-56
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    59   1e-07
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    59   1e-07
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        49   1e-04
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    49   1e-04
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    48   3e-04
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    43   0.010
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 37   0.71
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 37   0.71
AY142138_1(AY142138|pid:none) Giardia intestinalis isolate WB cl...    37   0.71
protein update 2009. 6. 9
PSORT 

 psg: 0.63  gvh: 0.35  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 1.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSC604 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSC604Z
3' end seq. 
>SSC604Z.Seq
----------AAAGGTACTTGCAAGACTGTTCAATGTCCAAAAGGTTACAAATGCAAACT
CTATGCTGATGGTCCAACATGTGTAAAGATTGAAAAACCAAAATGTCTCACTTGTAAAGA
TATGCATTGTGAGTCAAATGGATTACTCTGTGTCTTGACTCCACAAAAGAAGACTGATGA
AGAATGTTGTCCAATTATTCCAATCTGTATCAATCCATCAACTATTGCCGCATCCACTAT
TGCCACTACAACTGCATCAACTCGTCACTCAACTGCCTCAACAATTGCCTCATTAGTCAC
TGGTACCACAAGTGGTGGTGGTGGTATGGGTTCATTTGGTGGTCGATCCGATGAAGAATC
AAGTGANCCAAATGCTANACTTGGTCTCTTTGAAGACGATATTNTCTGGGGTGATAATGA
TGAATACTTTAGTGATAACTACCGTTATGTTGATGAAGAAGATATTGATGAAGATTTCAA
TGGTAATGATGAATTTGAAATTGATGTTGAAGGTGATTTCCAAGAAGATGATTTCGAAGA
AGAATATGCATTTTATTAAATTAAACTCTTTTTNNNNNNAAAATAATAATAATAATTTAA
TAACTAATCATTATCATCAATAATAACATTATAATATTACTTTAATAACAACACTTTTTT
TAATANTCAAAGACTTTACAAAAA
Length of 3' end seq. 674
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -