>SSC582 (SSC582Q) /CSM/SS/SSC5-D/SSC582Q.Seq.d/
XXXXXXXXXXAAAGTTTAAGAAAGCATCATATCAAAGAAGAAGATGTTATTCATCTCAAG
GGTGATGTAAAAGAACATTTTTATGAATTTNAAATTGTAAAAGAAGCTCACAATATGGCA
TTTNAAAAATGTACCGTTGAAGAAGGTTTACAATTAAGAGATTTGTTCAATGGAGAGGGT
AATATTTTTACAACCTCATTTCATATCAATGAGGATAAAAGTGAACTTTCTCAACTCTTT
ATTGACAATTGCATTGAAAAGGGTGTTAGTGCCGTTCCACATTTGGTGTATAATGGTGCA
TCTTCATTACTCACAATTGATGTCAATGGTGAAGAATATGAAATCAGCAGAAAAAGATTA
AATGGTTTGTCAAACTACATCAAAAGTGTTTACTCAACTGGAGATTTGCTTGAACCTCAA
GATCACATTTTTGGTAAAATCCATCCAAGTAGAACTTTTCAAAGAACTTTGAAGAAATAC
TATATGTTTATGAAACGTATTAGTGAATTACTTGACAACTAAAATCAACAAGATGTNCCA
AACTCAAATCATTCAAAAAAAAAAAAAAA

---SLRKHHIKEEDVIHLKGDVKEHFYEFXIVKEAHNMAFXKCTVEEGLQLRDLFNGEGN
IFTTSFHINEDKSELSQLFIDNCIEKGVSAVPHLVYNGASSLLTIDVNGEEYEISRKRLN
GLSNYIKSVYSTGDLLEPQDHIFGKIHPSRTFQRTLKKYYMFMKRISELLDN*nqqdvpn
snhskkkk

Frame A:
---kfkkasyqrrrcyssqg*ckrtfl*ixnckrssqygixkmyr*rrftikrfvqwrg*
yfynlisyq*g*k*tfstly*qlh*kgc*crstfgv*wcifithn*cqw*ri*nqqkkik
wfvklhqkcllnwrfa*tsrshfw*npsk*nfsknfeeilyvyety**it*qlkstrcxk
lksfkkkkk


Frame B:
---SLRKHHIKEEDVIHLKGDVKEHFYEFXIVKEAHNMAFXKCTVEEGLQLRDLFNGEGN
IFTTSFHINEDKSELSQLFIDNCIEKGVSAVPHLVYNGASSLLTIDVNGEEYEISRKRLN
GLSNYIKSVYSTGDLLEPQDHIFGKIHPSRTFQRTLKKYYMFMKRISELLDN*nqqdvpn
snhskkkk


Frame C:
---v*esiiskkkmlfisrvm*knifmnxkl*kkltiwhxknvplkkvyn*eicsmervi
flqphfismrikvnflnslltialkrvlvpfhiwcimvhlhysqlmsmvknmksaekd*m
vcqttskvftqleiclnlkitflvksiqvelfkel*rnticl*nvlvnylttkinkmxqt
qiiqkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC582 (SSC582Q) /CSM/SS/SSC5-D/SSC582Q.Seq.d/                       1061   0.0
SSM290 (SSM290Q) /CSM/SS/SSM2-D/SSM290Q.Seq.d/                       1053   0.0
SSK841 (SSK841Q) /CSM/SS/SSK8-B/SSK841Q.Seq.d/                       1053   0.0
SSK556 (SSK556Q) /CSM/SS/SSK5-C/SSK556Q.Seq.d/                       1053   0.0
SSK444 (SSK444Q) /CSM/SS/SSK4-B/SSK444Q.Seq.d/                       1053   0.0
SSI322 (SSI322Q) /CSM/SS/SSI3-A/SSI322Q.Seq.d/                       1053   0.0
SSH888 (SSH888Q) /CSM/SS/SSH8-D/SSH888Q.Seq.d/                       1053   0.0
SSG806 (SSG806Q) /CSM/SS/SSG8-A/SSG806Q.Seq.d/                       1053   0.0
SSG616 (SSG616Q) /CSM/SS/SSG6-A/SSG616Q.Seq.d/                       1053   0.0
SSG514 (SSG514Q) /CSM/SS/SSG5-A/SSG514Q.Seq.d/                       1053   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.  1053  0.0  1
AC133847|AC133847.3 Rattus norvegicus clone CH230-7I2, WORKING DRAFT SEQUENCE, 2 unordered pieces.    36  0.13  4
AC120676|AC120676.4 Rattus norvegicus clone CH230-38D7, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    36  0.18  4
Z79752|Z79752.2 Caenorhabditis elegans cosmid D2005.              38  0.32  2
AL772420|AL772420.5 Oryza sativa chromosome 12, ***SEQUENCING IN PROGRESS***. BAC  OJ1410_G05 of library Monsanto from chromosome 12 of cultivar  Nipponbare of ssp. japonica of Oryza sativa (rice).    40  0.36  3
AL451145|AL451145.15 Human DNA sequence from clone RP11-164A17 on chromosome 6.    34  1.7  3
AG123279|AG123279.1 Pan troglodytes DNA, clone: PTB-132O04.F.     44  1.8  1
AC126179|AC126179.8 Homo sapiens 12 BAC RP11-593H4 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44  1.8  1
AC053514|AC053514.4 Homo sapiens chromosome 12 clone RP11-408B11, WORKING DRAFT SEQUENCE, 7 unordered pieces.    44  2.3  3
AC109493|AC109493.1 Homo sapiens chromosome 5 clone RP11-740D3, WORKING DRAFT SEQUENCE, 5 unordered pieces.    36  2.6  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86I43) RecName: Full=Uncharacterized protein DDB_G0275161;  &A...   337   1e-91
AE017332_42(AE017332|pid:none) Mycoplasma hyopneumoniae 232, com...    36   0.81
AE017244_42(AE017244|pid:none) Mycoplasma hyopneumoniae 7448, co...    36   0.81
CP000498_625(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    35   1.1
AY820142_1(AY820142|pid:none) Brassica rapa disease resistance-l...    34   3.1
AL670542_12(AL670542|pid:none) Neurospora crassa DNA linkage gro...    34   3.1
CP000348_2503(CP000348|pid:none) Leptospira borgpetersenii serov...    33   5.2
CP000350_243(CP000350|pid:none) Leptospira borgpetersenii serova...    33   5.2
CP000312_850(CP000312|pid:none) Clostridium perfringens SM101, c...    33   6.8
EU304328_12(EU304328|pid:none) Ostreococcus virus OsV5, complete...    33   6.8

 psg: 0.66  gvh: 0.30  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall

>> prediction for SSC582 is cyt

>SSC582Z.Seq
----------AAAGTTTAAGAAAGCATCATATCAAAGAAGAAGATGTTATTCATCTCAAG
GGTGATGTAAAAGAACATTTTTATGAATTTNAAATTGTAAAAGAAGCTCACAATATGGCA
TTTNAAAAATGTACCGTTGAAGAAGGTTTACAATTAAGAGATTTGTTCAATGGAGAGGGT
AATATTTTTACAACCTCATTTCATATCAATGAGGATAAAAGTGAACTTTCTCAACTCTTT
ATTGACAATTGCATTGAAAAGGGTGTTAGTGCCGTTCCACATTTGGTGTATAATGGTGCA
TCTTCATTACTCACAATTGATGTCAATGGTGAAGAATATGAAATCAGCAGAAAAAGATTA
AATGGTTTGTCAAACTACATCAAAAGTGTTTACTCAACTGGAGATTTGCTTGAACCTCAA
GATCACATTTTTGGTAAAATCCATCCAAGTAGAACTTTTCAAAGAACTTTGAAGAAATAC
TATATGTTTATGAAACGTATTAGTGAATTACTTGACAACTAAAATCAACAAGATGTNCCA
AACTCAAATCATTCAAAAAAAAAAAAAAA