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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC551
Library SS
(Link to library)
Clone ID SSC551
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15149-1
Original site URL
Representative seq. ID SSC551E
(Link to Original site)
Representative DNA sequence 
>SSC551 (SSC551Q) /CSM/SS/SSC5-C/SSC551Q.Seq.d/
TATTTGTAAATTTGTGTGTGTGTATTTATTATATTAAAAAAATTATTAAAAAATAAAAAT
AAAAATAAAAATAAAAAACCCCATCGAAACATAAATCTCACACATTTCAAATTTATACGC
ACTTTTTTTCATTTAACAATAATTTTTTTTTTTTCGTTTTACATCAAAAAAAAAAAAAAA
AAAAAAAATTTTCATTTACATACCCACAAAATAATCAACAAATTATATATACATCCAAAT
TTAAATATTACATATATAAATATAGCGCAAAAATAAAACAAAAATACAATGAAAATACTT
GCAACCTTATTTACAATTTTATTATTGGTCAATTTTTGTTTTTCAACACCAATTCGTTTA
CTTGATGGTAATAATTGTTCATTTAATGCAACCGATGGTAAAATTTATGATTTAAGTTCA
ATTGGTTATCTCGAATATAATTATCCATCAACTTCTGTTGTCCCAAACAGAATTATTGCT
TTAAATCTTTGTTCTGCATTAACTGGAACTCAACCATGTGGAACTAATCCCCTATATTTG
CCAAAAAGATAGTGCCCACAAGTCAAACTGGTATGGGTCTTACAGCAACAACTCCAACTC
AATTACAACCATCTGCAAATGATACCTTTGNTTCTTTACAATATACTGGTGTACTTTGTG
GTATGAATAACATAAAAAAACCATTGTCAACATTGAATGTGGAGGTAGCGATAAAATTTT
TTCTGTTACCCAAGGCACTTTAAAACCTAATGCTTGTAGTGTTCAAAATACTATTATCAT
TCAATCTAATATGTTTTGTTCATCTTCACCAAAATCTGGTCTTTCAGGTGGTGATGTTTT
CTTAATTATATTTTTTTGTGGTTTTGGTGCATACTTTATTTTTGGTATTGCAATTCAATG
TTATAGAGGAAAGAGAGGAGCTGAAGCTGTACCAAATATCGAATTCTGGAAAAGTTTTGG
TGGATTAATTAAAGATGGTGTTGGTTTCATTAAATCCAAGATTTTCCGTACAGCTGCCAC
TTCTGGTTATCAAGCAATCTAAACATTTTAATTTTGTAAATTAATATATAGTTAATAAAA
ACAAAAACAAAAACAAAAACAAAACAAAAAAAAATTAAAATTAATTTGGTGTGGAAAGAA
TGGTGTAGTAAATGGATTATAGTTTTATTTAAAAATAAAAAAAATATGATGTAATAAATG
AATCATANTTTTACAATAAAAAAAAAAAAA
sequence update 1999. 4. 2
Translated Amino Acid sequence 
ickfvcvylly*kny*kikikikiknpiet*ishisnlyalffi*q*ffffrftskkkkk
kkifiyiptk*stnyiyiqi*ilhi*i*rknktkiq*kylqpylqfyywsifvfqhqfvy
lmviivhlmqpmvkfmi*vqlvisniiihqlllsqtelll*ifvlh*lelnhvelipyic
qkdsahksnwygsysnnsnsittick*ylxfftiywctlwye*HKKTIVNIECGGSDKIF
SVTQGTLKPNACSVQNTIIIQSNMFCSSSPKSGLSGGDVFLIIFFCGFGAYFIFGIAIQC
YRGKRGAEAVPNIEFWKSFGGLIKDGVGFIKSKIFRTAATSGYQAI*tf*fckliys**k
qkqkqkqnkkklkliwcgkngvvngl*fylkikki*cnk*iixlq*kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
yl*icvcvfiilkkllknknknknkkphrninlthfkfirtffhltiifffsfyikkkkk
kknfhlhthkiinklyihpnlnityiniaqk*nkntmkilatlftilllvnfcfstpirl
ldgnncsfnatdgkiydlssigyleynypstsvvpnriialnlcsaltgtqpcgtnplyl
pkr*cpqvklvwvlqqqlqlnynhlqmiplxlynilvyfvv*it*knhcqh*mwr*r*nf
fcyprhfkt*cl*cskyyyhsi*yvlfiftkiwsfrw*cflnyiflwfwcilyfwycnsm
l*rkers*sctkyrilekfwwin*rwcwfh*iqdfpyschfwlssnlnilil*ini*lik
tktktktkqkkikinlvwkewcskwiivlfknkknmm**mnhxftikkkk


Frame B:
ickfvcvylly*kny*kikikikiknpiet*ishisnlyalffi*q*ffffrftskkkkk
kkifiyiptk*stnyiyiqi*ilhi*i*rknktkiq*kylqpylqfyywsifvfqhqfvy
lmviivhlmqpmvkfmi*vqlvisniiihqlllsqtelll*ifvlh*lelnhvelipyic
qkdsahksnwygsysnnsnsittick*ylxfftiywctlwye*HKKTIVNIECGGSDKIF
SVTQGTLKPNACSVQNTIIIQSNMFCSSSPKSGLSGGDVFLIIFFCGFGAYFIFGIAIQC
YRGKRGAEAVPNIEFWKSFGGLIKDGVGFIKSKIFRTAATSGYQAI*tf*fckliys**k
qkqkqkqnkkklkliwcgkngvvngl*fylkikki*cnk*iixlq*kkk


Frame C:
fvnlcvciyyikkiikk*k*k*k*ktpskhkshtfqiythffsfnnnffffvlhqkkkkk
kkfsftypqnnqqiiytskfkyyiykysakikqkynentcnliynfiigqflffntnsft
*w**lfi*cnrw*nl*fkfnwlsri*lsinfccpkqnycfkslfcinwnstmwn*spifa
kkivptsqtgmgltattptqlqpsandtfxslqytgvlcgmnnikkplstlnvevaikff
llpkal*nlmlvvfkillsfnlicfvhlhqnlvfqvvmfs*lyffvvlvhtlflvlqfnv
ieereelklyqisnsgkvlvd*lkmvlvslnprfsvqlpllvikqskhfnfvn*yivnkn
knknknktkkn*n*fgvermv**mdysfi*k*kkydvinesxfynkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC551 (SSC551Q) /CSM/SS/SSC5-C/SSC551Q.Seq.d/                       1455   0.0
VSF483 (VSF483Q) /CSM/VS/VSF4-D/VSF483Q.Seq.d/                       1384   0.0
VFJ566 (VFJ566Q) /CSM/VF/VFJ5-C/VFJ566Q.Seq.d/                       1231   0.0
VFG542 (VFG542Q) /CSM/VF/VFG5-B/VFG542Q.Seq.d/                       1217   0.0
VSA580 (VSA580Q) /CSM/VS/VSA5-D/VSA580Q.Seq.d/                       1021   0.0
VFG472 (VFG472Q) /CSM/VF/VFG4-C/VFG472Q.Seq.d/                        963   0.0
FC-AS13 (FC-AS13Q) /CSM/FC/FC-AS/FC-AS13Q.Seq.d/                      668   0.0
VSJ732 (VSJ732Q) /CSM/VS/VSJ7-B/VSJ732Q.Seq.d/                        476   e-133
VSC502 (VSC502Q) /CSM/VS/VSC5-A/VSC502Q.Seq.d/                        371   e-101
VFO469 (VFO469Q) /CSM/VF/VFO4-C/VFO469Q.Seq.d/                         88   4e-16
own update 2001.11.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AP006363|AP006363.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 1, clone:LjT34B12, TM0147b.    48  0.26  1
AZ208484|AZ208484.1 SP_0151_A1_H07_SP6E Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=151 Col=13 Row=O, DNA sequence.    36  0.32  2
AC114304|AC114304.1 Homo sapiens chromosome 5 clone RP11-18M15, WORKING DRAFT SEQUENCE, 3 unordered pieces.    44  0.49  3
AL121892|AL121892.9 Human DNA sequence from clone RP5-1195D24 on chromosome 20. Contains STSs and GSSs.    36  0.52  4
AC014931|AC014931.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    46  1.0  1
AC134109|AC134109.3 Rattus norvegicus clone CH230-156F5, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    46  1.0  1
AX349042|AX349042.1 Sequence 500 from Patent WO0202807.           38  2.1  4
AC069315|AC069315.2 Homo sapiens chromosome 1 clone RP11-64N3, WORKING DRAFT SEQUENCE, 25 unordered pieces.    40  2.6  4
BX537300|BX537300.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-259K10.    38  2.8  7
AC137910|AC137910.2 Canis familiaris clone RP81-221F11, WORKING DRAFT SEQUENCE, 1 ordered piece.    36  2.9  4
dna update 2003. 7.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86JG6) RecName: Full=Cln5-like protein 1; Flags: Precursor;  &...    61   9e-08
BC157732_1(BC157732|pid:none) Xenopus laevis hypothetical LOC496...    47   0.001
BC108471_1(BC108471|pid:none) Xenopus laevis mannose-6-phosphate...    46   0.002
BC081319_1(BC081319|pid:none) Xenopus tropicalis MGC89423 protei...    45   0.004
DQ099737_1(DQ099737|pid:none) Takifugu rubripes mannose 6-phosph...    45   0.007
BT044728_1(BT044728|pid:none) Salmo salar clone ssal-rgf-502-030...    44   0.012
AY954824_1(AY954824|pid:none) Arabidopsis thaliana hypothetical ...    39   0.38
AY231418_1(AY231418|pid:none) Arabidopsis thaliana hypothetical ...    39   0.38
(O59745) RecName: Full=Putative mannose 6-phosphate receptor-lik...    39   0.38
AK227563_1(AK227563|pid:none) Arabidopsis thaliana mRNA for hypo...    39   0.38
protein update 2009. 7. 6
PSORT 

 psg: 0.69  gvh: 0.47  alm: 0.23  top: 0.60  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SSC551 is nuc
5' end seq. ID SSC551F
5' end seq. 
>SSC551F.Seq
TATTTGTAAATTTGTGTGTGTGTATTTATTATATTAAAAAAATTATTAAAAAATAAAAAT
AAAAATAAAAATAAAAAACCCCATCGAAACATAAATCTCACACATTTCAAATTTATACGC
ACTTTTTTTCATTTAACAATAATTTTTTTTTTTTCGTTTTACATCAAAAAAAAAAAAAAA
AAAAAAAATTTTCATTTACATACCCACAAAATAATCAACAAATTATATATACATCCAAAT
TTAAATATTACATATATAAATATAGCGCAAAAATAAAACAAAAATACAATGAAAATACTT
GCAACCTTATTTACAATTTTATTATTGGTCAATTTTTGTTTTTCAACACCAATTCGTTTA
CTTGATGGTAATAATTGTTCATTTAATGCAACCGATGGTAAAATTTATGATTTAAGTTCA
ATTGGTTATCTCGAATATAATTATCCATCAACTTCTGTTGTCCCAAACAGAATTATTGCT
TTAAATCTTTGTTCTGCATTAACTGGAACTCAACCATGTGGAACTAATCCAAAACCAACC
TATATTTGCCAAAAAGATAGTGCCACAAGTCAAACTGGTATGGGTCTTACAGCAACAACT
CCAACTCAATTACAACCATCTGCAAATGATACCTTTGTTTCTTTACAATATACTGGTGTA
CTTTGTGGTATGAATAACATAAA----------
Length of 5' end seq. 683
3' end seq. ID SSC551Z
3' end seq. 
>SSC551Z.Seq
----------CCTATATTTGCCAAAAAGATAGTGCCCACAAGTCAAACTGGTATGGGTCT
TACAGCAACAACTCCAACTCAATTACAACCATCTGCAAATGATACCTTTGGTTCTTTACA
ATATACTGGNGTACTTTGTGGTATGAATANCATAAAAACCATTGTCAACATTGAATGTGG
AGGTAGCGATAAAATTTTTTCTGTTACCCAAGGCACTTTAAAACCTAATGCTTGTAGTGT
TCAAAATACTATTATCATTCAATCTAATATGTTTTGTTCATCTTCACCAAAATCTGGTCT
TTCAGGTGGTGATGTTTTCTTAATTATATTTTTTTGTGGTTTTGGTGCATACTTTATTTT
TGGTATTGCAATTCAATGTTATAGAGGAAAGAGAGGAGCTGAAGCTGTACCAAATATCGA
ATTCTGGAAAAGTTTTGGTGGATTAATTAAAGATGGTGTTGGTTTCATTAAATCCAAGAT
TTTCCGTACAGCTGCCACTTCTGGTTATCAAGCAATCTAAACATTTTAATTTTGTAAATT
AATATATAGTTAATAAAAACAAAAACAAAAACAAAAACAAAACAAAAAAAAATTAAAATT
AATTTGGTGTGGAAAGAATGGTGTAGTAAATGGATTATAGTTTTATTTAAAAATAAAAAA
AATATGATGTAATAAATGAATCATANTTTTACAATAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 709
Connected seq. ID SSC551P
Connected seq. 
>SSC551P.Seq
TATTTGTAAATTTGTGTGTGTGTATTTATTATATTAAAAAAATTATTAAAAAATAAAAAT
AAAAATAAAAATAAAAAACCCCATCGAAACATAAATCTCACACATTTCAAATTTATACGC
ACTTTTTTTCATTTAACAATAATTTTTTTTTTTTCGTTTTACATCAAAAAAAAAAAAAAA
AAAAAAAATTTTCATTTACATACCCACAAAATAATCAACAAATTATATATACATCCAAAT
TTAAATATTACATATATAAATATAGCGCAAAAATAAAACAAAAATACAATGAAAATACTT
GCAACCTTATTTACAATTTTATTATTGGTCAATTTTTGTTTTTCAACACCAATTCGTTTA
CTTGATGGTAATAATTGTTCATTTAATGCAACCGATGGTAAAATTTATGATTTAAGTTCA
ATTGGTTATCTCGAATATAATTATCCATCAACTTCTGTTGTCCCAAACAGAATTATTGCT
TTAAATCTTTGTTCTGCATTAACTGGAACTCAACCATGTGGAACTAATCCAAAACCAACC
TATATTTGCCAAAAAGATAGTGCCACAAGTCAAACTGGTATGGGTCTTACAGCAACAACT
CCAACTCAATTACAACCATCTGCAAATGATACCTTTGTTTCTTTACAATATACTGGTGTA
CTTTGTGGTATGAATAACATAAA----------CCTATATTTGCCAAAAAGATAGTGCCC
ACAAGTCAAACTGGTATGGGTCTTACAGCAACAACTCCAACTCAATTACAACCATCTGCA
AATGATACCTTTGGTTCTTTACAATATACTGGNGTACTTTGTGGTATGAATANCATAAAA
ACCATTGTCAACATTGAATGTGGAGGTAGCGATAAAATTTTTTCTGTTACCCAAGGCACT
TTAAAACCTAATGCTTGTAGTGTTCAAAATACTATTATCATTCAATCTAATATGTTTTGT
TCATCTTCACCAAAATCTGGTCTTTCAGGTGGTGATGTTTTCTTAATTATATTTTTTTGT
GGTTTTGGTGCATACTTTATTTTTGGTATTGCAATTCAATGTTATAGAGGAAAGAGAGGA
GCTGAAGCTGTACCAAATATCGAATTCTGGAAAAGTTTTGGTGGATTAATTAAAGATGGT
GTTGGTTTCATTAAATCCAAGATTTTCCGTACAGCTGCCACTTCTGGTTATCAAGCAATC
TAAACATTTTAATTTTGTAAATTAATATATAGTTAATAAAAACAAAAACAAAAACAAAAA
CAAAACAAAAAAAAATTAAAATTAATTTGGTGTGGAAAGAATGGTGTAGTAAATGGATTA
TAGTTTTATTTAAAAATAAAAAAAATATGATGTAATAAATGAATCATANTTTTACAATAA
AAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 1392
Full length Seq ID SSC551E
Full length Seq. 
>SSC551E.Seq
TATTTGTAAATTTGTGTGTGTGTATTTATTATATTAAAAAAATTATTAAAAAATAAAAAT
AAAAATAAAAATAAAAAACCCCATCGAAACATAAATCTCACACATTTCAAATTTATACGC
ACTTTTTTTCATTTAACAATAATTTTTTTTTTTTCGTTTTACATCAAAAAAAAAAAAAAA
AAAAAAAATTTTCATTTACATACCCACAAAATAATCAACAAATTATATATACATCCAAAT
TTAAATATTACATATATAAATATAGCGCAAAAATAAAACAAAAATACAATGAAAATACTT
GCAACCTTATTTACAATTTTATTATTGGTCAATTTTTGTTTTTCAACACCAATTCGTTTA
CTTGATGGTAATAATTGTTCATTTAATGCAACCGATGGTAAAATTTATGATTTAAGTTCA
ATTGGTTATCTCGAATATAATTATCCATCAACTTCTGTTGTCCCAAACAGAATTATTGCT
TTAAATCTTTGTTCTGCATTAACTGGAACTCAACCATGTGGAACTAATCCCCTATATTTG
CCAAAAAGATAGTGCCCACAAGTCAAACTGGTATGGGTCTTACAGCAACAACTCCAACTC
AATTACAACCATCTGCAAATGATACCTTTGNTTCTTTACAATATACTGGTGTACTTTGTG
GTATGAATAACATAAAAAAACCATTGTCAACATTGAATGTGGAGGTAGCGATAAAATTTT
TTCTGTTACCCAAGGCACTTTAAAACCTAATGCTTGTAGTGTTCAAAATACTATTATCAT
TCAATCTAATATGTTTTGTTCATCTTCACCAAAATCTGGTCTTTCAGGTGGTGATGTTTT
CTTAATTATATTTTTTTGTGGTTTTGGTGCATACTTTATTTTTGGTATTGCAATTCAATG
TTATAGAGGAAAGAGAGGAGCTGAAGCTGTACCAAATATCGAATTCTGGAAAAGTTTTGG
TGGATTAATTAAAGATGGTGTTGGTTTCATTAAATCCAAGATTTTCCGTACAGCTGCCAC
TTCTGGTTATCAAGCAATCTAAACATTTTAATTTTGTAAATTAATATATAGTTAATAAAA
ACAAAAACAAAAACAAAAACAAAACAAAAAAAAATTAAAATTAATTTGGTGTGGAAAGAA
TGGTGTAGTAAATGGATTATAGTTTTATTTAAAAATAAAAAAAATATGATGTAATAAATG
AATCATANTTTTACAATAAAAAAAAAAAAA
Length of full length seq. 1230