SSC538
Library SS
(Link to library)
Clone ID SSC538
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13922-1
Original site URL
Representative seq. ID SSC538Z
(Link to Original site)
Representative DNA sequence
>SSC538 (SSC538Q) /CSM/SS/SSC5-B/SSC538Q.Seq.d/
XXXXXXXXXXATTAAATTCATCATCCTCATCCACCATCTCAAAGAGTAATAGCAATCAAA
GCCTTGCAAAGGAAACCAGTAGTAACAACCTCTTGCAATATCAATCACCAGTTAGAGTAG
CCAGCTCAACATCATCTGAGAATTTAGTCGATAGTGCTTCCATTATGAACAACGTTGATT
CTCATACCTCTGAAGAGAAAATGAAGCAAGAGGCAAAGAGATTAGAAAGATGGGGTTTAA
AGATTAACTCACCAACTGCTACCTCACCAAGCACTACCTCACCACCAGTCTCTAGTACCA
CTCCGGTTGCACCAGTGACTCCAACCGAACAATCTGTACCACAATCTCCATTCTCAACTG
GTGCTGCCGTCTCTGTCAATCAAAGTCATAGCAATCTCCCAATCGCTACTACCCAACAAT
TCCTTGATCGTATCGTTCTCTCTGCTAAATCCGTTAAACAAATCATTCAAAAGAAAACCT
CTAATCGTGATATTGTCATCTCTATTCTCATGGATTTAGTAAAGGAATCTGCAAACTTTG
GTATGACTCTCTCTTCAACTACCCCAATGTCTTTCGATATCTCTCAAAATGCTGGTAAAC
TCGCTGGTGCTGTCAATGAATTAGTTAAAGACACTGCTCACGAAAATAATAAAATCTTTG
ATGAAATTCAAGTACTCTTAGGTTTATTATATTTAGCTGTTGTTGCTAATTAGAGAAAAA
AA
sequence update 1997. 8.29
Translated Amino Acid sequence
---LNSSSSSTISKSNSNQSLAKETSSNNLLQYQSPVRVASSTSSENLVDSASIMNNVDS
HTSEEKMKQEAKRLERWGLKINSPTATSPSTTSPPVSSTTPVAPVTPTEQSVPQSPFSTG
AAVSVNQSHSNLPIATTQQFLDRIVLSAKSVKQIIQKKTSNRDIVISILMDLVKESANFG
MTLSSTTPMSFDISQNAGKLAGAVNELVKDTAHENNKIFDEIQVLLGLLYLAVVAN*rkk


Translated Amino Acid sequence (All Frames)
Frame A:
---LNSSSSSTISKSNSNQSLAKETSSNNLLQYQSPVRVASSTSSENLVDSASIMNNVDS
HTSEEKMKQEAKRLERWGLKINSPTATSPSTTSPPVSSTTPVAPVTPTEQSVPQSPFSTG
AAVSVNQSHSNLPIATTQQFLDRIVLSAKSVKQIIQKKTSNRDIVISILMDLVKESANFG
MTLSSTTPMSFDISQNAGKLAGAVNELVKDTAHENNKIFDEIQVLLGLLYLAVVAN*rkk


Frame B:
---*ihhphppsqrviaikalqrkpvvttscninhqle*paqhhlri*sivlpl*ttlil
iplkrk*skrqrd*kdgv*rlthqllphqalphhqslvplrlhq*lqpnnlyhnlhsqlv
lpslsikviaisqsllpnnslivsfsllnplnksfkrkplivilsslfswi**rnlqtlv
*lslqlpqclsislkmlvnslvlsmn*lktlltkiikslmkfkys*vyyi*llllirek


Frame C:
---kfiilihhlke**qskpckgnq**qplaisits*ssqlnii*efsr*cfhyeqr*fs
yl*reneargkeirkmgfkd*ltncyltkhylttsl*yhsgctsdsnrticttisilnwc
crlcqsks*qspnryyptip*syrslc*ir*tnhskenl*s*ychlyshgfskgicklwy
dslfnypnvfrylskcw*trwccq*is*rhcsrk**nl**nsstlrfiifsccc*lekk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSC538 (SSC538Q) /CSM/SS/SSC5-B/SSC538Q.Seq.d/ 1398 0.0
SSC534 (SSC534Q) /CSM/SS/SSC5-B/SSC534Q.Seq.d/ 1392 0.0
SFC268 (SFC268Q) /CSM/SF/SFC2-C/SFC268Q.Seq.d/ 1316 0.0
CFA872 (CFA872Q) /CSM/CF/CFA8-C/CFA872Q.Seq.d/ 1279 0.0
SFG704 (SFG704Q) /CSM/SF/SFG7-A/SFG704Q.Seq.d/ 1267 0.0
SLA529 (SLA529Q) /CSM/SL/SLA5-B/SLA529Q.Seq.d/ 1261 0.0
SLC832 (SLC832Q) /CSM/SL/SLC8-B/SLC832Q.Seq.d/ 1245 0.0
CHD103 (CHD103Q) /CSM/CH/CHD1-A/CHD103Q.Seq.d/ 1162 0.0
VFL163 (VFL163Q) /CSM/VF/VFL1-C/VFL163Q.Seq.d/ 1128 0.0
AFF249 (AFF249Q) /CSM/AF/AFF2-C/AFF249Q.Seq.d/ 1102 0.0

own update 2002.12.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF222688|AF222688.1 Dictyostelium discoideum dynacortin (dct) mRNA, complete cds. 1396 0.0 1
AC130930|AC130930.4 Rattus norvegicus clone CH230-483N21, WORKING DRAFT SEQUENCE, 4 unordered pieces. 36 2.2 4
AC094024|AC094024.7 Rattus norvegicus clone CH230-5O11, WORKING DRAFT SEQUENCE, 1 ordered piece. 44 2.4 1
AC019295|AC019295.3 Homo sapiens clone RP11-24O11, WORKING DRAFT SEQUENCE, 5 unordered pieces. 44 2.4 1
BX119902|BX119902.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-137I24. 44 2.4 1
AC114441|AC114441.5 Rattus norvegicus clone CH230-116K24, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 44 2.4 1
AC083781|AC083781.2 Homo sapiens chromosome 1 clone RP11-225N18 map 1, WORKING DRAFT SEQUENCE, 11 unordered pieces. 44 2.4 1
AC140082|AC140082.2 Rattus norvegicus clone CH230-223J12 strain Brown Norway, WORKING DRAFT SEQUENCE, 8 ordered pieces. 44 2.4 1
AC100613|AC100613.1 Mus musculus clone RP23-160F24, LOW-PASS SEQUENCE SAMPLING. 40 2.8 3
AC116578|AC116578.3 Mus musculus chromosome 9 clone RP23-264P8, complete sequence. 38 3.8 3
dna update 2003. 7.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF222688_1(AF222688|pid:none) Dictyostelium discoideum dynacorti... 328 1e-88
CP000090_1303(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 37 0.78
CP001408_431(CP001408|pid:none) Burkholderia pseudomallei MSHR34... 36 1.3
FM992688_1247(FM992688|pid:none) Candida dubliniensis CD36 chrom... 35 3.0
EU565733_1(EU565733|pid:none) Uncultured soil bacterium clone gl... 35 3.0
CP000010_2763(CP000010|pid:none) Burkholderia mallei ATCC 23344 ... 34 3.9
CP000526_104(CP000526|pid:none) Burkholderia mallei SAVP1 chromo... 34 3.9
CP000151_2972(CP000151|pid:none) Burkholderia sp. 383 chromosome... 34 5.1
AP009385_2728(AP009385|pid:none) Burkholderia multivorans ATCC 1... 33 6.6
AM260479_1383(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 33 6.6
protein update 2009. 6. 9
PSORT

psg: 0.68 gvh: 0.39 alm: 0.30 top: 0.63 tms: 0.07 mit: 0.37 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.02 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for SSC538 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSC538Z
3' end seq.
>SSC538Z.Seq
----------ATTAAATTCATCATCCTCATCCACCATCTCAAAGAGTAATAGCAATCAAA
GCCTTGCAAAGGAAACCAGTAGTAACAACCTCTTGCAATATCAATCACCAGTTAGAGTAG
CCAGCTCAACATCATCTGAGAATTTAGTCGATAGTGCTTCCATTATGAACAACGTTGATT
CTCATACCTCTGAAGAGAAAATGAAGCAAGAGGCAAAGAGATTAGAAAGATGGGGTTTAA
AGATTAACTCACCAACTGCTACCTCACCAAGCACTACCTCACCACCAGTCTCTAGTACCA
CTCCGGTTGCACCAGTGACTCCAACCGAACAATCTGTACCACAATCTCCATTCTCAACTG
GTGCTGCCGTCTCTGTCAATCAAAGTCATAGCAATCTCCCAATCGCTACTACCCAACAAT
TCCTTGATCGTATCGTTCTCTCTGCTAAATCCGTTAAACAAATCATTCAAAAGAAAACCT
CTAATCGTGATATTGTCATCTCTATTCTCATGGATTTAGTAAAGGAATCTGCAAACTTTG
GTATGACTCTCTCTTCAACTACCCCAATGTCTTTCGATATCTCTCAAAATGCTGGTAAAC
TCGCTGGTGCTGTCAATGAATTAGTTAAAGACACTGCTCACGAAAATAATAAAATCTTTG
ATGAAATTCAAGTACTCTTAGGTTTATTATATTTAGCTGTTGTTGCTAATTAGAGAAAAA
AA
Length of 3' end seq. 712
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -