>SSC537 (SSC537Q) /CSM/SS/SSC5-B/SSC537Q.Seq.d/
CTACTATTCAACCATCACTGAACAATCAATCGATTTAATCTATGAACTATTTTCACATTC
TTCAACAACTGATGAAATGAGATCATTGGTATTCGAAGATATCATAAAGGTATTGGGTGC
TTCAATGTTAACCAAATATCAAAAATATCATTCAACCATTTGGAAACTTTCTGTATCAAA
TTTAATTAAACTATTACCATCTGGTCTATTGGCAATTAATATCGATTCAAATCATTTAAA
TGATATTAAAAGAAATATCATTTGGACAGAGTTAATCGATTCAATTCAAACTTTTATACT
TCATGAAAGACCAAATCATCAAATTTCACCAGAGAAAAGATTAGAAGAGGATCAATATGA
TATTGATCTTATCAATGCAATTTCAAAGGAAATGGTTGGTTTCTCTGGTATTAAAGTTGA
ACGTGTTTCAATCATTCGTGATAGATTAGTTGAAATTTTACAAGAAGGTTCGGTTTTATC
TGCTCATGGTCGTGAAAAAGTTGXXXXXXXXXX

YYSTITEQSIDLIYELFSHSSTTDEMRSLVFEDIIKVLGASMLTKYQKYHSTIWKLSVSN
LIKLLPSGLLAINIDSNHLNDIKRNIIWTELIDSIQTFILHERPNHQISPEKRLEEDQYD
IDLINAISKEMVGFSGIKVERVSIIRDRLVEILQEGSVLSAHGREKV---

Frame A:
llfnhh*tinrfnl*tiftffnn**neiigirryhkgigcfnvnqiskisfnhletfcik
fn*titiwsign*yrfksfk*y*kkyhldrvnrfnsnfyts*ktkssnftrekirrgsi*
y*syqcnfkgngwflwy*s*tcfnhs**is*nftrrfgficsws*ks---


Frame B:
YYSTITEQSIDLIYELFSHSSTTDEMRSLVFEDIIKVLGASMLTKYQKYHSTIWKLSVSN
LIKLLPSGLLAINIDSNHLNDIKRNIIWTELIDSIQTFILHERPNHQISPEKRLEEDQYD
IDLINAISKEMVGFSGIKVERVSIIRDRLVEILQEGSVLSAHGREKV---


Frame C:
tiqpslnnqsi*smnyfhilqqlmk*dhwyskis*rywvlqc*pnikniiqpfgnflyqi
*lnyyhlvywqlisiqii*milkeisfgqs*siqfkllyfmkdqiikfhqrkd*krinmi
lilsmqfqrkwlvslvlklnvfqsfvid*lkfykkvrfyllmvvkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC537 (SSC537Q) /CSM/SS/SSC5-B/SSC537Q.Seq.d/                        997   0.0
VHE830 (VHE830Q) /CSM/VH/VHE8-B/VHE830Q.Seq.d/                         36   0.50
VHB377 (VHB377Q) /CSM/VH/VHB3-D/VHB377Q.Seq.d/                         36   0.50
SSL376 (SSL376Q) /CSM/SS/SSL3-D/SSL376Q.Seq.d/                         36   0.50
SSC591 (SSC591Q) /CSM/SS/SSC5-D/SSC591Q.Seq.d/                         36   0.50
SHH820 (SHH820Q) /CSM/SH/SHH8-A/SHH820Q.Seq.d/                         36   0.50
CHI392 (CHI392Q) /CSM/CH/CHI3-D/CHI392Q.Seq.d/                         36   0.50
AHQ526 (AHQ526Q) /CSM/AH/AHQ5-B/AHQ526Q.Seq.d/                         36   0.50
AHO649 (AHO649Q) /CSM/AH/AHO6-C/AHO649Q.Seq.d/                         36   0.50
AHN716 (AHN716Q) /CSM/AH/AHN7-A/AHN716Q.Seq.d/                         36   0.50

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC024674|AC024674.3 Homo sapiens chromosome 4 clone RP11-613O13 map 4, WORKING DRAFT SEQUENCE, 26 unordered pieces.    48  0.11  1
BH238352|BH238352.1 ATYCE41TR ATYC Arabidopsis thaliana genomic clone ATYCE41, DNA sequence.    36  0.18  2
AC067946|AC067946.6 Homo sapiens BAC clone RP11-627C20 from 4, complete sequence.    48  0.20  2
AC095050|AC095050.3 Homo sapiens BAC clone RP11-287F9 from 4, complete sequence.    48  0.30  2
BH238452|BH238452.1 ATYCG46TF ATYC Arabidopsis thaliana genomic clone ATYCG46, DNA sequence.    36  0.34  2
BH239363|BH239363.1 ATYCH35TR ATYC Arabidopsis thaliana genomic clone ATYCH35, DNA sequence.    36  0.34  2
BH239114|BH239114.1 ATYCK83TF ATYC Arabidopsis thaliana genomic clone ATYCK83, DNA sequence.    36  0.35  2
AP003975|AP003975.1 Oryza sativa genomic DNA, chromosome 2, BAC clone:OJ1004_E04, WORKING DRAFT SEQUENCE, 1 ordered pieces.    40  0.35  3
BH238326|BH238326.1 ATYCK68TR ATYC Arabidopsis thaliana genomic clone ATYCK68, DNA sequence.    36  0.35  2
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    32  0.71  9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK162859_1(AK162859|pid:none) Mus musculus adult male hypothalam...    57   3e-07
AK011826_1(AK011826|pid:none) Mus musculus 10 days embryo whole ...    57   3e-07
(Q80TL7) RecName: Full=Protein MON2 homolog; AltName: Full=Prote...    57   3e-07
AB014059_1(AB014059|pid:none) Mus musculus SF21 mRNA, complete c...    57   3e-07
BC150943_1(BC150943|pid:none) Mus musculus MON2 homolog (yeast),...    57   3e-07
AK092646_1(AK092646|pid:none) Homo sapiens cDNA FLJ35327 fis, cl...    57   3e-07
AL834320_1(AL834320|pid:none) Homo sapiens mRNA; cDNA DKFZp761D2...    57   3e-07
AL833066_1(AL833066|pid:none) Homo sapiens mRNA; cDNA DKFZp451J0...    57   3e-07
AB028963_1(AB028963|pid:none) Homo sapiens mRNA for KIAA1040 pro...    57   3e-07
BX537415_1(BX537415|pid:none) Homo sapiens mRNA; cDNA DKFZp686F0...    57   3e-07

 psg: 0.75  gvh: 0.42  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: cytoskeletal

>> prediction for SSC537 is cyt

>SSC537F.Seq
CTACTATTCAACCATCACTGAACAATCAATCGATTTAATCTATGAACTATTTTCACATTC
TTCAACAACTGATGAAATGAGATCATTGGTATTCGAAGATATCATAAAGGTATTGGGTGC
TTCAATGTTAACCAAATATCAAAAATATCATTCAACCATTTGGAAACTTTCTGTATCAAA
TTTAATTAAACTATTACCATCTGGTCTATTGGCAATTAATATCGATTCAAATCATTTAAA
TGATATTAAAAGAAATATCATTTGGACAGAGTTAATCGATTCAATTCAAACTTTTATACT
TCATGAAAGACCAAATCATCAAATTTCACCAGAGAAAAGATTAGAAGAGGATCAATATGA
TATTGATCTTATCAATGCAATTTCAAAGGAAATGGTTGGTTTCTCTGGTATTAAAGTTGA
ACGTGTTTCAATCATTCGTGATAGATTAGTTGAAATTTTACAAGAAGGTTCGGTTTTATC
TGCTCATGGTCGTGAAAAAGTTG----------