>SSC523 (SSC523Q) /CSM/SS/SSC5-A/SSC523Q.Seq.d/
ATTATTAAAAGATCATCACCACCTCATCTACCACTAAGTAGTCAAAATTATGATAATTTT
GGTTCAACACCACCTAGATTAACTACAAAATTATCTTCACCAAATTTATCAATTTCAATG
CCAACTTTTCCACAATCAAATTCTGTTCAACAGAATGGTAGTACTTCATCAATAATGAAA
CAACAATCACATGGTAGTAAATTAAATGATAATATTAATACCAACAATAATAATTCACCA
AGTCCAACATCATCATCAACAACATCTACAAATGGATCAAATACAAAAATTCAATTAAAA
AATCCAGTATTTGGTAAATTATTAACTAGAAAAGATTCTGTAATTACAGCAAGAAGAAAT
TGGATTTATGGATTTTCAGATCATCAAGTTGAAATTTATGATAATGTTACAAAAGTTTGG
AGAGGTGGTTCAAAAATACCAAAGAAATCAATAGAGTATAGTAGTATTTATGATAATAAT
TGTACAATCTATAGATTTGGTGGTAAGGAGACACCAAATGATATCTATTGTTATAATGTT
GATAGAGATATTTGGGACACAATAAAGTTAXXXXXXXXXX

IIKRSSPPHLPLSSQNYDNFGSTPPRLTTKLSSPNLSISMPTFPQSNSVQQNGSTSSIMK
QQSHGSKLNDNINTNNNNSPSPTSSSTTSTNGSNTKIQLKNPVFGKLLTRKDSVITARRN
WIYGFSDHQVEIYDNVTKVWRGGSKIPKKSIEYSSIYDNNCTIYRFGGKETPNDIYCYNV
DRDIWDTIK---

Frame A:
IIKRSSPPHLPLSSQNYDNFGSTPPRLTTKLSSPNLSISMPTFPQSNSVQQNGSTSSIMK
QQSHGSKLNDNINTNNNNSPSPTSSSTTSTNGSNTKIQLKNPVFGKLLTRKDSVITARRN
WIYGFSDHQVEIYDNVTKVWRGGSKIPKKSIEYSSIYDNNCTIYRFGGKETPNDIYCYNV
DRDIWDTIK---


Frame B:
llkdhhhliyh*vvkimiilvqhhld*lqnylhqiyqfqcqlfhnqilfnrmvvlhq**n
nnhmvvn*miiliptiiihqvqhhhqqhlqmdqiqkfn*kiqylvny*lekil*lqqeei
gfmdfqiiklkfmimlqkfgevvqkyqrnq*sivvfmiiivqsidlvvrrhqmisiviml
ieifgtq*s---


Frame C:
y*kiittssttk*skl**fwfntt*inykiiftkfinfnanfstikfcstew*yfinnet
titw**ik**y*yqq**ftksniiinniykwikyknsikkssiw*iin*krfcnyskkkl
dlwifrsss*nl**cykslerwfkntkeinrv**yl***lynl*iww*gdtk*ylll*c*
*rylghnkv---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC523 (SSC523Q) /CSM/SS/SSC5-A/SSC523Q.Seq.d/                       1130   0.0
AFH442 (AFH442Q) /CSM/AF/AFH4-B/AFH442Q.Seq.d/                       1098   0.0
AFD255 (AFD255Q) /CSM/AF/AFD2-C/AFD255Q.Seq.d/                        999   0.0
CFA372 (CFA372Q) /CSM/CF/CFA3-C/CFA372Q.Seq.d/                        842   0.0
SFG445 (SFG445Q) /CSM/SF/SFG4-B/SFG445Q.Seq.d/                        831   0.0
SSB237 (SSB237Q) /CSM/SS/SSB2-B/SSB237Q.Seq.d/                        656   0.0
CHB857 (CHB857Q) /CSM/CH/CHB8-C/CHB857Q.Seq.d/                        607   e-173
SSB573 (SSB573Q) /CSM/SS/SSB5-D/SSB573Q.Seq.d/                        436   e-121
SSJ758 (SSJ758Q) /CSM/SS/SSJ7-C/SSJ758Q.Seq.d/                         46   6e-04
AFE391 (AFE391Q) /CSM/AF/AFE3-D/AFE391Q.Seq.d/                         46   6e-04

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36  0.003  9
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    40  0.011  11
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.    38  0.013  6
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    40  0.015  7
AC116101|AC116101.2 Dictyostelium discoideum chromosome 2 map complement(427476-387492) strain AX4, complete sequence.    38  0.023  4
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    40  0.027  9
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    32  0.042  8
AX489538|AX489538.1 Sequence 6838 from Patent WO02053728.         40  0.051  2
AC119593|AC119593.6 Rattus norvegicus clone CH230-157A12, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces.    42  0.075  3
AW562128|AW562128.1 SWOvAFCAP35B02SK Onchocerca volvulus adult female cDNA (SAW98MLW-OvAF) Onchocerca volvulus cDNA clone SWOvAFCAP35B02 5', mRNA sequence.    36  0.081  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AX119015_1(AX119015|pid:none) Sequence 179 from Patent WO0129221.      35   1.5
(Q8NBE8) RecName: Full=Kelch-like protein 23;  &AK090653_1(AK090...    35   1.5
(Q5RCQ9) RecName: Full=Kelch-like protein 23;  &CR858210_1(CR858...    35   1.5
AK044892_1(AK044892|pid:none) Mus musculus 9.5 days embryo parth...    35   1.9
(Q56A24) RecName: Full=Kelch-like protein 24; AltName: Full=Kain...    35   1.9
AK000066_1(AK000066|pid:none) Homo sapiens cDNA FLJ20059 fis, cl...    35   1.9
AK046446_1(AK046446|pid:none) Mus musculus adult male corpora qu...    35   1.9
BC121419_1(BC121419|pid:none) Xenopus tropicalis DRE1 protein, m...    35   1.9
AK163616_1(AK163616|pid:none) Mus musculus 4 days neonate male a...    35   1.9
AB239909_1(AB239909|pid:none) Dictyostelium discoideum scdA gene...    34   2.5

 psg: 0.79  gvh: 0.51  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.20
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: mitochondrial
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for SSC523 is mit

>SSC523F.Seq
ATTATTAAAAGATCATCACCACCTCATCTACCACTAAGTAGTCAAAATTATGATAATTTT
GGTTCAACACCACCTAGATTAACTACAAAATTATCTTCACCAAATTTATCAATTTCAATG
CCAACTTTTCCACAATCAAATTCTGTTCAACAGAATGGTAGTACTTCATCAATAATGAAA
CAACAATCACATGGTAGTAAATTAAATGATAATATTAATACCAACAATAATAATTCACCA
AGTCCAACATCATCATCAACAACATCTACAAATGGATCAAATACAAAAATTCAATTAAAA
AATCCAGTATTTGGTAAATTATTAACTAGAAAAGATTCTGTAATTACAGCAAGAAGAAAT
TGGATTTATGGATTTTCAGATCATCAAGTTGAAATTTATGATAATGTTACAAAAGTTTGG
AGAGGTGGTTCAAAAATACCAAAGAAATCAATAGAGTATAGTAGTATTTATGATAATAAT
TGTACAATCTATAGATTTGGTGGTAAGGAGACACCAAATGATATCTATTGTTATAATGTT
GATAGAGATATTTGGGACACAATAAAGTTA----------