SSC521
Library SS
(Link to library)
Clone ID SSC521
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16352-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SSC521 (SSC521Q) /CSM/SS/SSC5-A/SSC521Q.Seq.d/
AGCTTTTCCACTAATAAATTAAATTATAAAATGTTATTCAAATCATTACAATCAATCACA
AGTGTTAACTCAATCCAAAAGAATCAAATTTCTTCAGTTTCAGTGGGAAGCTCTCAATCT
AATAACAATGCAGCACTCTTAGATGCAGCAGCACTTGTTGTAATTCCAGGTTTATTAGCA
GTTGCTGCTGTAGCTCATATTTAAATTATTCAAGGTTAATCAAATTCTCAATATTTCATA
TTAACTTCGAACTATATGAAAAAATTAAATAAAAATTTAATAATTCATTTAATTTAAATC
TTATTATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAXXXXXXXXXX
sequence update 1998. 8. 7
Translated Amino Acid sequence
SFSTNKLNYKMLFKSLQSITSVNSIQKNQISSVSVGSSQSNNNAALLDAAALVVIPGLLA
VAAVAHI*iiqg*snsqyfiltsnymkklnknliihli*illy*kkkkkkkkkkkkkkkk
kk---


Translated Amino Acid sequence (All Frames)
Frame A:
SFSTNKLNYKMLFKSLQSITSVNSIQKNQISSVSVGSSQSNNNAALLDAAALVVIPGLLA
VAAVAHI*iiqg*snsqyfiltsnymkklnknliihli*illy*kkkkkkkkkkkkkkkk
kk---


Frame B:
afplin*iikcysnhynqsqvltqskrikflqfqwealnlitmqhs*mqqhll*fqvy*q
lll*lifklfkvnqilnisy*lrti*kn*iki**fi*fksyyikkkkkkkkkkkkkkkkk
kk---


Frame C:
lfh**ikl*nviqiitinhkc*lnpkesnffsfsgklsi**qcstlrcsstccnsrfiss
cccssylnysrlikfsifhinfelyekik*kfnnsfnlnliilkkkkkkkkkkkkkkkkk
k---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSC521 (SSC521Q) /CSM/SS/SSC5-A/SSC521Q.Seq.d/ 511 e-144
SSE264 (SSE264Q) /CSM/SS/SSE2-C/SSE264Q.Seq.d/ 492 e-138
SSD821 (SSD821Q) /CSM/SS/SSD8-A/SSD821Q.Seq.d/ 490 e-138
SSB328 (SSB328Q) /CSM/SS/SSB3-B/SSB328Q.Seq.d/ 418 e-116
SSL723 (SSL723Q) /CSM/SS/SSL7-A/SSL723Q.Seq.d/ 406 e-113
SSK459 (SSK459Q) /CSM/SS/SSK4-C/SSK459Q.Seq.d/ 406 e-113
SSF295 (SSF295Q) /CSM/SS/SSF2-D/SSF295Q.Seq.d/ 406 e-113
SSK414 (SSK414Q) /CSM/SS/SSK4-A/SSK414Q.Seq.d/ 400 e-111
SSI495 (SSI495Q) /CSM/SS/SSI4-D/SSI495Q.Seq.d/ 400 e-111
SSD629 (SSD629Q) /CSM/SS/SSD6-B/SSD629Q.Seq.d/ 400 e-111

own update 2000. 8.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BI508128|BI508128.1 BB170006B20D10.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170006B20D10 5', mRNA sequence. 50 0.019 1
AC025367|AC025367.2 Homo sapiens chromosome 3 clone RP11-267D9 map 3, WORKING DRAFT SEQUENCE, 26 unordered pieces. 44 0.059 6
AF007261|AF007261.1 Reclinomonas americana mitochondrial DNA, complete genome. 40 0.17 3
AC132466|AC132466.2 Mus musculus chromosome UNK clone RP23-68N22, WORKING DRAFT SEQUENCE, 7 unordered pieces. 46 0.30 1
AX348307|AX348307.1 Sequence 2 from Patent WO0202806. 46 0.30 1
AX345007|AX345007.1 Sequence 78 from Patent WO0200928. 46 0.30 1
AF174310|AF174310.1 Aphidius ervi 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product. 30 0.48 3
AF176067|AF176067.1 Aphidius ervi 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product. 30 0.59 3
AF289146|AF289146.1 Aphidius colemani 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product. 30 0.64 3
AF289147|AF289147.1 Aphidius ervi 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product. 30 0.64 3
dna update 2003. 7.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54M59) RecName: Full=Uncharacterized transmembrane protein DDB... 32 5.3
(Q54R31) RecName: Full=Uncharacterized transmembrane protein DDB... 32 5.3

protein update 2009. 1.27
PSORT

psg: 0.76 gvh: 0.59 alm: 0.20 top: 0.63 tms: 0.07 mit: 0.42 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.30 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.26 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

44.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SSC521 is nuc

5' end seq. ID SSC521F
5' end seq.
>SSC521F.Seq
AGCTTTTCCACTAATAAATTAAATTATAAAATGTTATTCAAATCATTACAATCAATCACA
AGTGTTAACTCAATCCAAAAGAATCAAATTTCTTCAGTTTCAGTGGGAAGCTCTCAATCT
AATAACAATGCAGCACTCTTAGATGCAGCAGCACTTGTTGTAATTCCAGGTTTATTAGCA
GTTGCTGCTGTAGCTCATATTTAAATTATTCAAGGTTAATCAAATTCTCAATATTTCATA
TTAACTTCGAACTATATGAAAAAATTAAATAAAAATTTAATAATTCATTTAATTTAAATC
TTATTATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
Length of 5' end seq. 368
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -