>SSC489 (SSC489Q) /CSM/SS/SSC4-D/SSC489Q.Seq.d/
XXXXXXXXXXGATTTGCTTGACCCTCAAGATCCCATTTTTGGTAAAATCCACCCANGTGG
AACTTTTCAAGGAACTTTGAGGAAATNCTATATGTTTATGAACCGTATTAGTGAATTACT
TGACNACTAAAATCAACAAGATGTTCCAAACTCAAATCATTCNAAANAAAAAAAACCAAA
TTATCTAAAAAAGGTTTTTTAATATAAAACTAAGTTGTTTANCCCAAATTGGTTTTATTT
ACAAGTGAAATTAAAAAAATTTCCACTACATAAGTTAAATATAATTTTTATGTTTATTTA
TTTTAAAATAAAATAAAATAAAACAAAATAGAAATCTAAATGATTTTTATTTTTTTAATT
GGTGCTTTGAATAAAATAAAATAAAATAAAATAAAATAATAATTAAAACAAAAGGTATAA
AAAAAAAAAAAAAAA

---LLDPQDPIFGKIHPXGTFQGTLRKXYMFMNRISELLDX*nqqdvpnsnhskxkkpny
lkkvf*yktklfxpnwfylqvklkkfplhklniifmfiyfkik*nktk*ksk*flff*lv
l*ik*nkik*nnn*nkrykkkkk

Frame A:
---icltlkipflvkstxvelfkel*gnxicl*tvlvnylttkinkmfqtqiixxkknqi
i*krffniklsclxqigfiyk*n*knfhyis*i*flclfilk*nkikqnrnlndfyffnw
cfe*nkik*nkiiiktkgikkkkk


Frame B:
---fa*psrshfw*nppxwnfsrnfeexlyvyepy**it*xlkstrcsklksfxxkktkl
skkgfli*n*vvxpklvlftseikkistt*vkynfyvylf*nkik*nkiei*mififlig
alnkik*nkik**lkqkv*kkkkk


Frame C:
---LLDPQDPIFGKIHPXGTFQGTLRKXYMFMNRISELLDX*nqqdvpnsnhskxkkpny
lkkvf*yktklfxpnwfylqvklkkfplhklniifmfiyfkik*nktk*ksk*flff*lv
l*ik*nkik*nnn*nkrykkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC489 (SSC489Q) /CSM/SS/SSC4-D/SSC489Q.Seq.d/                        396   e-109
SSK107 (SSK107Q) /CSM/SS/SSK1-A/SSK107Q.Seq.d/                        325   3e-88
SSM714 (SSM714Q) /CSM/SS/SSM7-A/SSM714Q.Seq.d/                        230   1e-59
SSM290 (SSM290Q) /CSM/SS/SSM2-D/SSM290Q.Seq.d/                        230   1e-59
SSK556 (SSK556Q) /CSM/SS/SSK5-C/SSK556Q.Seq.d/                        230   1e-59
SSK289 (SSK289Q) /CSM/SS/SSK2-D/SSK289Q.Seq.d/                        230   1e-59
SSI215 (SSI215Q) /CSM/SS/SSI2-A/SSI215Q.Seq.d/                        230   1e-59
SSH888 (SSH888Q) /CSM/SS/SSH8-D/SSH888Q.Seq.d/                        230   1e-59
SSH443 (SSH443Q) /CSM/SS/SSH4-B/SSH443Q.Seq.d/                        230   1e-59
SSF809 (SSF809Q) /CSM/SS/SSF8-A/SSF809Q.Seq.d/                        230   1e-59

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   230  9e-88  3
AJ227093|AJ227093.1 Ciona intestinalis genomic fragment, clone 2B8.    44  1.4  1
BM728003|BM728003.1 UI-E-EJ0-ait-f-09-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone UI-E-EJ0-ait-f-09-0-UI 5', mRNA sequence.    38  2.7  2
CB850517|CB850517.1 UI-CF-EN1-acv-h-21-0-UI.s1 UI-CF-EN1 Homo sapiens cDNA clone UI-CF-EN1-acv-h-21-0-UI 3', mRNA sequence.    38  2.8  2
CB240758|CB240758.1 UI-CF-FN0-afw-i-18-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone UI-CF-FN0-afw-i-18-0-UI 3', mRNA sequence.    38  3.2  2
AX067459|AX067459.1 Sequence 34 from Patent WO0078968.            38  4.6  2
CC285799|CC285799.1 CH261-16M10_Sp6.1 CH261 Gallus gallus genomic clone CH261-16M10, DNA sequence.    40  5.1  2
AA834997|AA834997.1 aj50c10.s1 Soares_testis_NHT Homo sapiens cDNA clone IMAGE:1393746 3', mRNA sequence.    42  5.5  1
BI339903|BI339903.1 365018 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence.    42  5.5  1
BX276116|BX276116.6 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  XXyac-907D11.    42  5.5  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86I43) RecName: Full=Uncharacterized protein DDB_G0275161;  &A...    64   2e-09

 psg: 0.75  gvh: 0.34  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSC489 is cyt

>SSC489Z.Seq
----------GATTTGCTTGACCCTCAAGATCCCATTTTTGGTAAAATCCACCCANGTGG
AACTTTTCAAGGAACTTTGAGGAAATNCTATATGTTTATGAACCGTATTAGTGAATTACT
TGACNACTAAAATCAACAAGATGTTCCAAACTCAAATCATTCNAAANAAAAAAAACCAAA
TTATCTAAAAAAGGTTTTTTAATATAAAACTAAGTTGTTTANCCCAAATTGGTTTTATTT
ACAAGTGAAATTAAAAAAATTTCCACTACATAAGTTAAATATAATTTTTATGTTTATTTA
TTTTAAAATAAAATAAAATAAAACAAAATAGAAATCTAAATGATTTTTATTTTTTTAATT
GGTGCTTTGAATAAAATAAAATAAAATAAAATAAAATAATAATTAAAACAAAAGGTATAA
AAAAAAAAAAAAAAA