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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC482
Library SS
(Link to library)
Clone ID SSC482
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16310-1
Original site URL
Representative seq. ID SSC482Z
(Link to Original site)
Representative DNA sequence 
>SSC482 (SSC482Q) /CSM/SS/SSC4-D/SSC482Q.Seq.d/
XXXXXXXXXXCCCCAATTTGAAATTGAAGGTGCCCNAAATATTTTATTATCNGANGCCTC
AAAAATTCAACCAACCTTATCAAACAAAGTTGTTGATATCGTAGTTGTTTTACTCGCTCA
AAATCANGACTCAACCATCAAACAATTCCAATCTGTTGTTGAAAAATCATCATTCGTTTC
TTTCTTTACTGCTGCTTCTGCTCATGAATTTGATGTTCAAGCTACTTTCAACAAACAAGT
TGAACAATCATTTTTACAAGATGGTTCATCATCATTAAATTCAGCCAGCCAACAAGGTAG
TGGATCAAGTAGTTCAGGATCAAATGACCCAACTAAACAACATTTCACTTATGTTACTGG
TCCAGTCCTTTCTGCTTATTTGATTATCTCAATCTTATTAGCCATTTTATTCACTGGTAT
TTGTTGTATTTCTGATCTCCAAGTTCCAGATAGATACGAAGCNCCAAAGAGCAAAGTACT
TTAAAAAAAAAAAAATAATAAAAAATTAATACCAAATAATTTATAAAACAAATAAAATAT
GACATATAATAAAAAATAAAAAATAAACAAAAAAAAAAAAAAAAAAAAGATTAAT
sequence update 1997. 8.22
Translated Amino Acid sequence 
---QFEIEGAXNILLSXASKIQPTLSNKVVDIVVVLLAQNXDSTIKQFQSVVEKSSFVSF
FTAASAHEFDVQATFNKQVEQSFLQDGSSSLNSASQQGSGSSSSGSNDPTKQHFTYVTGP
VLSAYLIISILLAILFTGICCISDLQVPDRYEAPKSKVL*kkknnkklipnnl*nk*nmt
ynkk*kinkkkkkkkin
Translated Amino Acid sequence (All Frames) 
Frame A:
---pnlklkvpxifyyxxpqkfnqpyqtkllis*lfyslkixtqpsnnsnlllknhhsfl
sllllllmnlmfkllstnklnnhfykmvhhh*iqpankvvdqvvqdqmtqlnnislmllv
qsflli*lsqsy*pfyslvfvvfliskfqidtkxqrakyfkkkkiikn*yqiiyktnki*
hiiknkk*tkkkkkkrl


Frame B:
---pi*n*rcpkyfiixxlknstnlikqsc*yrscftrsksxlnhqtipicc*kiiirff
lyccfcs*i*cssyfqqts*tiiftrwfiiikfsqptr*wik*frik*pn*ttfhlcyws
spfclfdylnlishfihwyllyf*spssr*irsxkeqstlkkkk**kintk*fikqikyd
i**kiknkqkkkkkkd*


Frame C:
---QFEIEGAXNILLSXASKIQPTLSNKVVDIVVVLLAQNXDSTIKQFQSVVEKSSFVSF
FTAASAHEFDVQATFNKQVEQSFLQDGSSSLNSASQQGSGSSSSGSNDPTKQHFTYVTGP
VLSAYLIISILLAILFTGICCISDLQVPDRYEAPKSKVL*kkknnkklipnnl*nk*nmt
ynkk*kinkkkkkkkin
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC482 (SSC482Q) /CSM/SS/SSC4-D/SSC482Q.Seq.d/                        906   0.0
SSM106 (SSM106Q) /CSM/SS/SSM1-A/SSM106Q.Seq.d/                        896   0.0
SSK743 (SSK743Q) /CSM/SS/SSK7-B/SSK743Q.Seq.d/                        896   0.0
SSK616 (SSK616Q) /CSM/SS/SSK6-A/SSK616Q.Seq.d/                        896   0.0
SSK603 (SSK603Q) /CSM/SS/SSK6-A/SSK603Q.Seq.d/                        896   0.0
SSK304 (SSK304Q) /CSM/SS/SSK3-A/SSK304Q.Seq.d/                        896   0.0
SSK290 (SSK290Q) /CSM/SS/SSK2-D/SSK290Q.Seq.d/                        896   0.0
SSG822 (SSG822Q) /CSM/SS/SSG8-A/SSG822Q.Seq.d/                        896   0.0
SSF484 (SSF484Q) /CSM/SS/SSF4-D/SSF484Q.Seq.d/                        896   0.0
SSF445 (SSF445Q) /CSM/SS/SSF4-B/SSF445Q.Seq.d/                        896   0.0
own update 2001. 8.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU051960) Dictyostelium discoideum slug cDNA, clone SSC482.      906   0.0    1
(AU284498) Dictyostelium discoideum gamete cDNA clone:FC-AZ2...   896   0.0    1
(AU038889) Dictyostelium discoideum slug cDNA, clone SSM106.      896   0.0    1
(AU037841) Dictyostelium discoideum slug cDNA, clone SSE359.      896   0.0    1
(AU037819) Dictyostelium discoideum slug cDNA, clone SSE333.      896   0.0    1
(C94394) Dictyostelium discoideum slug cDNA, clone SSK616.        896   0.0    1
(C94386) Dictyostelium discoideum slug cDNA, clone SSK603.        896   0.0    1
(C94289) Dictyostelium discoideum slug cDNA, clone SSK743.        896   0.0    1
(C93021) Dictyostelium discoideum slug cDNA, clone SSF484.        896   0.0    1
(C93009) Dictyostelium discoideum slug cDNA, clone SSF445.        896   0.0    1
dna update 2009. 7.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_20(AC116330|pid:none) Dictyostelium discoideum chromoso...   167   3e-40
protein update 2009. 1.27
PSORT 

 psg: 0.75  gvh: 0.55  alm: 0.14  top: 0.50  tms: 0.07  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.08  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: nuclear
	 20.0 %: cytoplasmic
	 20.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSC482 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSC482Z
3' end seq. 
>SSC482Z.Seq
----------CCCCAATTTGAAATTGAAGGTGCCCNAAATATTTTATTATCNGANGCCTC
AAAAATTCAACCAACCTTATCAAACAAAGTTGTTGATATCGTAGTTGTTTTACTCGCTCA
AAATCANGACTCAACCATCAAACAATTCCAATCTGTTGTTGAAAAATCATCATTCGTTTC
TTTCTTTACTGCTGCTTCTGCTCATGAATTTGATGTTCAAGCTACTTTCAACAAACAAGT
TGAACAATCATTTTTACAAGATGGTTCATCATCATTAAATTCAGCCAGCCAACAAGGTAG
TGGATCAAGTAGTTCAGGATCAAATGACCCAACTAAACAACATTTCACTTATGTTACTGG
TCCAGTCCTTTCTGCTTATTTGATTATCTCAATCTTATTAGCCATTTTATTCACTGGTAT
TTGTTGTATTTCTGATCTCCAAGTTCCAGATAGATACGAAGCNCCAAAGAGCAAAGTACT
TTAAAAAAAAAAAAATAATAAAAAATTAATACCAAATAATTTATAAAACAAATAAAATAT
GACATATAATAAAAAATAAAAAATAAACAAAAAAAAAAAAAAAAAAAAGATTAAT
Length of 3' end seq. 585
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -