SSC474
Library SS
(Link to library)
Clone ID SSC474
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U07719-1
Original site URL
Representative seq. ID SSC474P
(Link to Original site)
Representative DNA sequence
>SSC474 (SSC474Q) /CSM/SS/SSC4-D/SSC474Q.Seq.d/
GTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCAT
TCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAA
ATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTG
ATGCTGGTGGTTATTATTTTAATGGTTGTTCATTTGGTATTATTCCAAAAAAATAAAATA
ATAAAAAAATATAAATAAATAAAAAAATAAAAAAATAAATAAAAAAATAAATAAAAATAT
AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAAATATTACTAAAAAAAA
AAAAAAAAXXXXXXXXXXGGGCCATCATTTCCAGGGCTAGATACTATTGGCATTTAGTAT
ACACTCTTGGGNTACTGATTGGGGTATTGATGGATACATTTACGTANCTACTGGTTCTGA
TTTATGTGGTATTACTTTTGAATNAACTATGGTTGTTGTTTAATTACTTTATTTANCCTC
TTCTCTTTTTCTTTATTTGTATGATTTCTGTTGTAAAAAAAAAATAAAAAAAAAAAATAA
AATTAATTGTTAAAAA
sequence update 1998.12. 2
Translated Amino Acid sequence
lfqi*s*fqfklllcnsccilpswffhynekc*snsskyk**cflinc**clchffyff*
cwwllf*wlfiwyyskkik**knink*knkkinkkinknink*ink*ink*INKNITKKK
KK---

---AIISRARYYWHLVYTLGXLIGVLMDTFTXLLVLIYVVLLLNXLWLLFNYFIXPLLFF
FICMISVVKKK*kkkiklivk


Translated Amino Acid sequence (All Frames)
Frame A:
visnlklisvqiiiv*fllhssklvlplq*emliqliqiqivmlsyqllimfmsllllll
mlvviilmvvhlvlfqknkiikkyk*ikk*knk*knk*kyk*ink*ink*ink*kyy*kk
kk---

---gpsfpgldtigi*ytllgy*lgy*wihlrxywf*fmwyyf*xnygcclitlfxlfsf
slfv*fll*kknkkkk*n*llk

Frame B:
lfqi*s*fqfklllcnsccilpswffhynekc*snsskyk**cflinc**clchffyff*
cwwllf*wlfiwyyskkik**knink*knkkinkkinknink*ink*ink*INKNITKKK
KK---

---ghhfqg*illafsihswxtdwgidgyiyvxtgsdlcgitfextmvvv*llylxsslf
lylydfcckkkikkknkinc*k

Frame C:
yfkfevdfssnyycvipvaffqagssitmrnadpthpntnsdaflstvdnvyvtsftssd
aggyyfngcsfgiipkk*nnkki*inkkikk*ikk*iki*ink*ink*ink*ikillkkk
kk---

---AIISRARYYWHLVYTLGXLIGVLMDTFTXLLVLIYVVLLLNXLWLLFNYFIXPLLFF
FICMISVVKKK*kkkiklivk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHJ874 (SHJ874Q) /CSM/SH/SHJ8-D/SHJ874Q.Seq.d/ 448 e-125
SSK275 (SSK275Q) /CSM/SS/SSK2-D/SSK275Q.Seq.d/ 448 e-125
SSJ519 (SSJ519Q) /CSM/SS/SSJ5-A/SSJ519Q.Seq.d/ 448 e-125
SSI677 (SSI677Q) /CSM/SS/SSI6-D/SSI677Q.Seq.d/ 448 e-125
SSG727 (SSG727Q) /CSM/SS/SSG7-B/SSG727Q.Seq.d/ 448 e-125
SSF888 (SSF888Q) /CSM/SS/SSF8-D/SSF888Q.Seq.d/ 448 e-125
SSF246 (SSF246Q) /CSM/SS/SSF2-B/SSF246Q.Seq.d/ 448 e-125
SSF149 (SSF149Q) /CSM/SS/SSF1-C/SSF149Q.Seq.d/ 448 e-125
SSE643 (SSE643Q) /CSM/SS/SSE6-B/SSE643Q.Seq.d/ 448 e-125
SSE121 (SSE121Q) /CSM/SS/SSE1-A/SSE121Q.Seq.d/ 448 e-125

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU071762) Dictyostelium discoideum slug cDNA, clone SSC474. 448 e-121 1
(AU060185) Dictyostelium discoideum slug cDNA, clone SLA535. 448 e-121 1
(AU052349) Dictyostelium discoideum slug cDNA, clone SLD177. 448 e-121 1
(AU051910) Dictyostelium discoideum slug cDNA, clone SSC376. 448 e-121 1
(AU039482) Dictyostelium discoideum slug cDNA, clone SLH868. 448 e-121 1
(AU037641) Dictyostelium discoideum slug cDNA, clone SSE121. 448 e-121 1
(AU037448) Dictyostelium discoideum slug cDNA, clone SSD651. 448 e-121 1
(AU034350) Dictyostelium discoideum slug cDNA, clone SLC730. 448 e-121 1
(AU034220) Dictyostelium discoideum slug cDNA, clone SLC275. 448 e-121 1
(AU034014) Dictyostelium discoideum slug cDNA, clone SLB807. 448 e-121 1
dna update 2009. 7.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116956_19(AC116956|pid:none) Dictyostelium discoideum chromoso... 61 3e-08
(P43234) RecName: Full=Cathepsin O; EC=3.4.22.42; Flags... 39 0.12
EF538805_1(EF538805|pid:none) Trypanoplasma borreli cathepsin L ... 39 0.15
DQ381232_1(DQ381232|pid:none) Ictalurus punctatus clone SNNC08 c... 39 0.15
BC067615_1(BC067615|pid:none) Danio rerio cathepsin H, mRNA (cDN... 39 0.15
EU915298_1(EU915298|pid:none) Ictalurus punctatus cathspsin H mR... 39 0.15
AJ719384_1(AJ719384|pid:none) Gallus gallus mRNA for hypothetica... 38 0.20
BC120003_1(BC120003|pid:none) Bos taurus cathepsin F, mRNA (cDNA... 38 0.26
AC084046_2(AC084046|pid:none) Trypanosoma brucei chromosome 6 cl... 37 0.34
EU528473_1(EU528473|pid:none) Helicoverpa armigera cathepsin 1-l... 37 0.44
protein update 2009. 6. 9
PSORT

psg: 0.60 gvh: 0.61 alm: 0.19 top: 0.77 tms: 0.13 mit: 0.44 mip: 0.00
nuc: 0.08 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

28.0 %: endoplasmic reticulum
16.0 %: nuclear
16.0 %: vacuolar
16.0 %: plasma membrane
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for SSC474 is end

5' end seq. ID SSC474F
5' end seq.
>SSC474F.Seq
GTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCAT
TCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAA
ATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTG
ATGCTGGTGGTTATTATTTTAATGGTTGTTCATTTGGTATTATTCCAAAAAAATAAAATA
ATAAAAAAATATAAATAAATAAAAAAATAAAAAAATAAATAAAAAAATAAATAAAAATAT
AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAAATATTACTAAAAAAAA
AAAAAAAA----------
Length of 5' end seq. 368
3' end seq. ID SSC474Z
3' end seq.
>SSC474Z.Seq
----------GGGCCATCATTTCCAGGGCTAGATACTATTGGCATTTAGTATACACTCTT
GGGNTACTGATTGGGGTATTGATGGATACATTTACGTANCTACTGGTTCTGATTTATGTG
GTATTACTTTTGAATNAACTATGGTTGTTGTTTAATTACTTTATTTANCCTCTTCTCTTT
TTCTTTATTTGTATGATTTCTGTTGTAAAAAAAAAATAAAAAAAAAAAATAAAATTAATT
GTTAAAAA
Length of 3' end seq. 238
Connected seq. ID SSC474P
Connected seq.
>SSC474P.Seq
GTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCAT
TCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAA
ATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTG
ATGCTGGTGGTTATTATTTTAATGGTTGTTCATTTGGTATTATTCCAAAAAAATAAAATA
ATAAAAAAATATAAATAAATAAAAAAATAAAAAAATAAATAAAAAAATAAATAAAAATAT
AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAAATATTACTAAAAAAAA
AAAAAAAA----------GGGCCATCATTTCCAGGGCTAGATACTATTGGCATTTAGTAT
ACACTCTTGGGNTACTGATTGGGGTATTGATGGATACATTTACGTANCTACTGGTTCTGA
TTTATGTGGTATTACTTTTGAATNAACTATGGTTGTTGTTTAATTACTTTATTTANCCTC
TTCTCTTTTTCTTTATTTGTATGATTTCTGTTGTAAAAAAAAAATAAAAAAAAAAAATAA
AATTAATTGTTAAAAA
Length of connected seq. 606
Full length Seq ID -
Full length Seq. -
Length of full length seq. -