SSC470
Library SS
(Link to library)
Clone ID SSC470
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16581-1
Original site URL
Representative seq. ID SSC470E
(Link to Original site)
Representative DNA sequence
>SSC470 (SSC470Q) /CSM/SS/SSC4-C/SSC470Q.Seq.d/
GTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGG
TTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTNCGAGNG
GAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGNCAAAATNGTGNCCTGCCGCT
ACCANCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAANCCATTCTAGAAACGCAANC
CAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTT
CAACTTTAANCCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGT
GGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTA
TCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTT
TTCCATTAGTTAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997.11.24
Translated Amino Acid sequence
vglfth*qgt*agfrps*drlvlpyccqlfa***hdlvrxelscritgl*vylxkxxpaa
txrwimaerl*vrxhsrnaxqml*svnvvgnirllvgdhfql*xi*LIAVTLQFPSGYCG
GWLNSNLYPRSAQLFDCRRLSNELGAVSFRVAFSYEGLRLFH*ln*kkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
vglfth*qgt*agfrps*drlvlpyccqlfa***hdlvrxelscritgl*vylxkxxpaa
txrwimaerl*vrxhsrnaxqml*svnvvgnirllvgdhfql*xi*LIAVTLQFPSGYCG
GWLNSNLYPRSAQLFDCRRLSNELGAVSFRVAFSYEGLRLFH*ln*kkkkkkkk


Frame B:
ldcsptnkerelgldrretg*fyptvvnclrnssmi*xexnchagslvcrfixqnxxlpl
pxvg*wlnasksexiletqxkcfrv*ml*vtlgcwwgttfnfxpyd*sllhcsflpvivv
gg*iliyilvplnssivddyqmn*vl*ase*rsvtrg*gfsis*ikkkkkkkkk


Frame C:
wivhpltrnvswv*tvvrqvsftlllsivcviva*fsxxgtvmpdhwsvglfxkxvxcry
xpldng*tplsqxpf*krxpnalececcr*h*vvgggplstlxhminrcytavsfrllww
vakf*fissfrstlrl*ttik*trccklpssvqlrgveafplvklkkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSC470 (SSC470Q) /CSM/SS/SSC4-C/SSC470Q.Seq.d/ 930 0.0
SSC453 (SSC453Q) /CSM/SS/SSC4-C/SSC453Q.Seq.d/ 930 0.0
VHN205 (VHN205Q) /CSM/VH/VHN2-A/VHN205Q.Seq.d/ 920 0.0
VHL440 (VHL440Q) /CSM/VH/VHL4-B/VHL440Q.Seq.d/ 920 0.0
VHK875 (VHK875Q) /CSM/VH/VHK8-D/VHK875Q.Seq.d/ 920 0.0
VHI207 (VHI207Q) /CSM/VH/VHI2-A/VHI207Q.Seq.d/ 920 0.0
VHD686 (VHD686Q) /CSM/VH/VHD6-D/VHD686Q.Seq.d/ 920 0.0
VHD592 (VHD592Q) /CSM/VH/VHD5-D/VHD592Q.Seq.d/ 920 0.0
VFF294 (VFF294Q) /CSM/VF/VFF2-D/VFF294Q.Seq.d/ 920 0.0
SLE369 (SLE369Q) /CSM/SL/SLE3-C/SLE369Q.Seq.d/ 920 0.0

own update 2002.12.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(C84194) Dictyostelium discoideum slug cDNA, clone SSC470. 930 0.0 1
(C84184) Dictyostelium discoideum slug cDNA, clone SSC453. 930 0.0 1
(AY171066) Dictyostelium discoideum extrachromosomal palindr... 920 0.0 1
(AU034938) Dictyostelium discoideum slug cDNA, clone SLE369. 920 0.0 1
(BJ444668) Dictyostelium discoideum cDNA clone:ddv57i02, 3' ... 920 0.0 1
(BJ443600) Dictyostelium discoideum cDNA clone:ddv53p10, 3' ... 920 0.0 1
(BJ443401) Dictyostelium discoideum cDNA clone:ddv52f20, 3' ... 920 0.0 1
(BJ441582) Dictyostelium discoideum cDNA clone:ddv47m02, 3' ... 920 0.0 1
(BJ438918) Dictyostelium discoideum cDNA clone:ddv38k22, 3' ... 920 0.0 1
(BJ438901) Dictyostelium discoideum cDNA clone:ddv38g23, 3' ... 920 0.0 1
dna update 2009. 7.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU430725_1(EU430725|pid:none) Cupressus sempervirens clone CYPLP... 53 4e-06
AL844509_690(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 39 0.078

protein update 2009. 7. 6
PSORT

psg: 0.90 gvh: 0.54 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SSC470 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSC470E
Full length Seq.
>SSC470E.Seq
GTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGG
TTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTNCGAGNG
GAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGNCAAAATNGTGNCCTGCCGCT
ACCANCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAANCCATTCTAGAAACGCAANC
CAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTT
CAACTTTAANCCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGT
GGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTA
TCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTT
TTCCATTAGTTAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 523