>SSC463 (SSC463Q) /CSM/SS/SSC4-C/SSC463Q.Seq.d/
XXXXXXXXXXCCACATCCTTAAAATGCGCAAATGGAAATAATNGCACTTTTATTATGNCA
TTTNCCTGTTCTAATAATCAAGTAATTTCATCCTCATTAGTTTCAGNGAATAATTGTATT
TATACTGTAGAAATGAGTGGAAACATTTTTTGTCCCACTCCAACTCCAACTCCAACTCCA
ACTCCAACTCCTACTCCTAATCCAACTTCAAATGTACCCTGTAAATCATCCAATGGAATT
TCAATAACTNGTTCGGATATCATTACATGTATTGGATATGGTCAATCAATATGTACAACA
TCATCNGGCTATTCATGTGAACCCAATCAAACTAATGGAGTTCTTAAATGTATTTCNCCT
GATAATTCAATTTCATGTATTGGTAATCAATTCTATTGTTATACTCAATCTTATACATGC
TCAGTTGATTTTAAATCTTATGATGGATTACAAGTGAATGGTAAAATCATTAATTCAACT
TATTTTTCATCATAATTTACTTCAAAATGCTCCTTTTTACGATGCCAAGTAATTCATTAA
AAACTTAAAAAGTAATAAAAAATNGCTTATATTTATTTAAATATTAATTCTAATTTTAAA
AAAAAAAAAAAAAAAAAAAAAA

---TSLKCANGNNXTFIMXFXCSNNQVISSSLVSXNNCIYTVEMSGNIFCPTPTPTPTPT
PTPTPNPTSNVPCKSSNGISITXSDIITCIGYGQSICTTSSGYSCEPNQTNGVLKCISPD
NSISCIGNQFYCYTQSYTCSVDFKSYDGLQVNGKIINSTYFSS*ftskcsflrcqvih*k
lkk**kxayiylninsnfkkkkkkkk

Frame A:
---hilkmrkwk*xhfyyxixlf**ssnfilisfxe*lylycrnewkhflshsnsnsnsn
snsys*snfkctl*iiqwnfnnxfgyhymywiwsinmyniixlfm*tqsn*wss*myfx*
*fnfmyw*silllysilymls*f*il*witsew*nh*fnlffiiiyfkmllftmpsnslk
t*kviknxlylfky*f*f*kkkkkkk


Frame B:
---TSLKCANGNNXTFIMXFXCSNNQVISSSLVSXNNCIYTVEMSGNIFCPTPTPTPTPT
PTPTPNPTSNVPCKSSNGISITXSDIITCIGYGQSICTTSSGYSCEPNQTNGVLKCISPD
NSISCIGNQFYCYTQSYTCSVDFKSYDGLQVNGKIINSTYFSS*ftskcsflrcqvih*k
lkk**kxayiylninsnfkkkkkkkk


Frame C:
---hp*naqmeixalllxhxpvliik*fhph*fqxiivfil*k*vetffvplqlqlqlql
qlllliqlqmypvnhpmefq*lvrislhvldmvnqyvqhhxaihvnpiklmeflnvfxli
iqfhvlvinsivilnlihaqlilnlmmdyk*mvksliqlifhhnllqnapfydak*fikn
lksnkkxlifi*ilililkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC463 (SSC463Q) /CSM/SS/SSC4-C/SSC463Q.Seq.d/                        636   0.0
SSI339 (SSI339Q) /CSM/SS/SSI3-B/SSI339Q.Seq.d/                        613   e-174
SSF554 (SSF554Q) /CSM/SS/SSF5-C/SSF554Q.Seq.d/                        613   e-174
SSD172 (SSD172Q) /CSM/SS/SSD1-C/SSD172Q.Seq.d/                        613   e-174
SSA767 (SSA767Q) /CSM/SS/SSA7-C/SSA767Q.Seq.d/                        613   e-174
SLH555 (SLH555Q) /CSM/SL/SLH5-C/SLH555Q.Seq.d/                         40   0.039
SLB193 (SLB193Q) /CSM/SL/SLB1-D/SLB193Q.Seq.d/                         40   0.039
SHL410 (SHL410Q) /CSM/SH/SHL4-A/SHL410Q.Seq.d/                         40   0.039
FC-BF06 (FC-BF06Q) /CSM/FC/FC-BF/FC-BF06Q.Seq.d/                       38   0.16
VHN657 (VHN657Q) /CSM/VH/VHN6-C/VHN657Q.Seq.d/                         36   0.61

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC126723|AC126723.5 Rattus norvegicus clone CH230-3O3, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    50  0.033  1
AC068472|AC068472.5 Homo sapiens chromosome 11, clone RP11-713P14, complete sequence.    48  0.13  1
AC100762|AC100762.2 Homo sapiens chromosome 11 clone CTD-2268K15 map 11, LOW-PASS SEQUENCE SAMPLING.    48  0.13  1
AL935119|AL935119.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-198H6.    48  0.13  1
AC064813|AC064813.2 Homo sapiens chromosome 15 clone RP11-691D11 map 15, LOW-PASS SEQUENCE SAMPLING.    40  0.41  4
AC122446|AC122446.4 Mus musculus chromosome 17 clone RP24-240N12, complete sequence.    46  0.51  1
Z81106|Z81106.1 Caenorhabditis elegans cosmid R06C1.              46  0.51  1
AX232505|AX232505.1 Sequence 3 from Patent WO0162969.             46  0.51  1
AC010165|AC010165.10 Homo sapiens chromosome 5 clone RP11-17J3, complete sequence.    40  0.89  3
AC021853|AC021853.3 Homo sapiens chromosome 11 clone RP11-496C3, WORKING DRAFT SEQUENCE, 17 unordered pieces.    48  1.2  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116957_104(AC116957|pid:none) Dictyostelium discoideum chromos...    40   0.068
T18270(T18270) hypothetical protein - slime mold (Dictyostelium ...    37   0.34
(P54681) RecName: Full=Protein rtoA; AltName: Full=Ratio-A; Flag...    33   6.4
AC116032_6(AC116032|pid:none) Dictyostelium discoideum chromosom...    33   6.4

 psg: 0.93  gvh: 0.51  alm: 0.47  top: 0.33  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 12.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSC463 is nuc

>SSC463Z.Seq
----------CCACATCCTTAAAATGCGCAAATGGAAATAATNGCACTTTTATTATGNCA
TTTNCCTGTTCTAATAATCAAGTAATTTCATCCTCATTAGTTTCAGNGAATAATTGTATT
TATACTGTAGAAATGAGTGGAAACATTTTTTGTCCCACTCCAACTCCAACTCCAACTCCA
ACTCCAACTCCTACTCCTAATCCAACTTCAAATGTACCCTGTAAATCATCCAATGGAATT
TCAATAACTNGTTCGGATATCATTACATGTATTGGATATGGTCAATCAATATGTACAACA
TCATCNGGCTATTCATGTGAACCCAATCAAACTAATGGAGTTCTTAAATGTATTTCNCCT
GATAATTCAATTTCATGTATTGGTAATCAATTCTATTGTTATACTCAATCTTATACATGC
TCAGTTGATTTTAAATCTTATGATGGATTACAAGTGAATGGTAAAATCATTAATTCAACT
TATTTTTCATCATAATTTACTTCAAAATGCTCCTTTTTACGATGCCAAGTAATTCATTAA
AAACTTAAAAAGTAATAAAAAATNGCTTATATTTATTTAAATATTAATTCTAATTTTAAA
AAAAAAAAAAAAAAAAAAAAAA