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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC451
Library SS
(Link to library)
Clone ID SSC451
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13400-1
Original site URL
Representative seq. ID SSC451P
(Link to Original site)
Representative DNA sequence 
>SSC451 (SSC451Q) /CSM/SS/SSC4-C/SSC451Q.Seq.d/
CAACAAACAAAAAAAAAAAAAATTTAAATTTTTTACAAAAAAATGGCAGCATTAGAAAAT
TTTTTAATTTTAAGAGATGGAATTAACCAATCAAAATTTATGGAAATGTTTGAAAAATTT
TTTCATGAAAATGTTGTAATGATCCAAAATGGAGCCATCATAGAGGGAAAAGCCAAAAAT
AGAGAAATCCAAGAAAACTTTATTAAAAACTCTGTTATTCATGAAATTAAAATTGTTTCA
TTTGAAGAAAGGGGAGACACTATTGTTTATCAAATGGTAATGAATTTTGAAATTGGTGGT
CATGTAATTAACAAAAACCAAGAGGTTCATCAAACTTGGGAATATGATAAAGTTATTAGA
GAATTATATGTTTAGAAAAAAGTAAAAAAGAAAAAAAAAGTAAAAATTAATAATTTTATA
TAAAATTAAATAAAAATATCATTTGAATTTATTTTTAAATGATTTAATAATTAAATAACA
XXXXXXXXXXAAATTTANTTAAAATTTCNTTTGGATTTTTTTTTTAATGGTTTTTTTTTT
TAATTAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAATAATCTTTAAGAAAGCTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998.12. 2
Translated Amino Acid sequence 
tnkkkknlnflqkngsirkffnfkrwn*pikiygnv*kifs*kccndpkwshhrgksqk*
rnprkly*klcys*n*ncfi*rkgrhyclsngnef*nwwscn*qkprgssnlgi**sy*r
iiclekskkekkskn**fyiklnknii*iyf*mi**LNN---

---IXLKFXLDFFFNGFFF*lkkkkkkkknknnl*es*kkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
qqtkkkki*ifykkmaalenflilrdginqskfmemfekffhenvvmiqngaiiegkakn
reiqenfiknsviheikivsfeergdtivyqmvmnfeigghvinknqevhqtweydkvir
elyv*kkvkkkkkvkinnfi*n*ikisfefifk*fnn*it---

---kfx*nfxwifflmvfffn*kkkkkkkkikiifkkakkkkkkkkkkkkkk

Frame B:
nkqkkkkfkfftkkwqh*kif*f*emeltnqnlwkclknffmkml**skmeps*rekpki
ekskktllktllfmklklfhlkkgetllfikw**ilklvvm*ltktkrfiklgnmiklle
nymfrkk*krkkk*kliilykik*kyhlnlflndliik*---

---nlxkisfgfff*wffflikkkkkkkkk*k*slrklkkkkkkkkkkkkkk

Frame C:
tnkkkknlnflqkngsirkffnfkrwn*pikiygnv*kifs*kccndpkwshhrgksqk*
rnprkly*klcys*n*ncfi*rkgrhyclsngnef*nwwscn*qkprgssnlgi**sy*r
iiclekskkekkskn**fyiklnknii*iyf*mi**LNN---

---IXLKFXLDFFFNGFFF*lkkkkkkkknknnl*es*kkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM329 (SSM329Q) /CSM/SS/SSM3-B/SSM329Q.Seq.d/                        658   0.0
SSJ707 (SSJ707Q) /CSM/SS/SSJ7-A/SSJ707Q.Seq.d/                        658   0.0
SSJ575 (SSJ575Q) /CSM/SS/SSJ5-D/SSJ575Q.Seq.d/                        658   0.0
SSH546 (SSH546Q) /CSM/SS/SSH5-B/SSH546Q.Seq.d/                        658   0.0
SSD306 (SSD306Q) /CSM/SS/SSD3-A/SSD306Q.Seq.d/                        658   0.0
SSC451 (SSC451Q) /CSM/SS/SSC4-C/SSC451Q.Seq.d/                        658   0.0
SSC280 (SSC280Q) /CSM/SS/SSC2-D/SSC280Q.Seq.d/                        658   0.0
SSA543 (SSA543Q) /CSM/SS/SSA5-B/SSA543Q.Seq.d/                        658   0.0
SSA518 (SSA518Q) /CSM/SS/SSA5-A/SSA518Q.Seq.d/                        658   0.0
SSJ109 (SSJ109Q) /CSM/SS/SSJ1-A/SSJ109Q.Seq.d/                        652   0.0
own update 2004. 8.26
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    42  0.003  7
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    42  0.019  8
Z98857|Z98857.36 Caenorhabditis elegans DNA *** SEQUENCING IN PROGRESS *** from clone.    38  0.075  7
AP001119|AP001119.1 Buchnera sp. APS genomic DNA, complete sequence, segment 2/2.    36  0.093  8
BZ958765|BZ958765.1 PgH009I11e Panax ginseng BAC library (PgH BAC) Panax ginseng genomic clone PgH009I11, DNA sequence.    48  0.13  1
BZ958382|BZ958382.1 PgH008F08e Panax ginseng BAC library (PgH BAC) Panax ginseng genomic clone PgH008F08, DNA sequence.    48  0.13  1
AC025727|AC025727.3 Caenorhabditis elegans cosmid Y73E7A, complete sequence.    40  0.19  3
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    32  0.21  7
AX344573|AX344573.1 Sequence 24 from Patent WO0200932.            34  0.23  8
AF003141|AF003141.2 Caenorhabditis elegans cosmid W02D3, complete sequence.    42  0.25  3
dna update 2003. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000083_2430(CP000083|pid:none) Colwellia psychrerythraea 34H, ...    33   6.8
AM474825_2(AM474825|pid:none) Vitis vinifera contig VV78X075200....    33   8.9
BX908798_1158(BX908798|pid:none) Parachlamydia-related symbiont ...    33   8.9
protein update 2009. 1.27
PSORT 

 psg: 0.51  gvh: -0.25  alm: 0.87  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 2.24  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SSC451 is nuc
5' end seq. ID SSC451F
5' end seq. 
>SSC451F.Seq
CAACAAACAAAAAAAAAAAAAATTTAAATTTTTTACAAAAAAATGGCAGCATTAGAAAAT
TTTTTAATTTTAAGAGATGGAATTAACCAATCAAAATTTATGGAAATGTTTGAAAAATTT
TTTCATGAAAATGTTGTAATGATCCAAAATGGAGCCATCATAGAGGGAAAAGCCAAAAAT
AGAGAAATCCAAGAAAACTTTATTAAAAACTCTGTTATTCATGAAATTAAAATTGTTTCA
TTTGAAGAAAGGGGAGACACTATTGTTTATCAAATGGTAATGAATTTTGAAATTGGTGGT
CATGTAATTAACAAAAACCAAGAGGTTCATCAAACTTGGGAATATGATAAAGTTATTAGA
GAATTATATGTTTAGAAAAAAGTAAAAAAGAAAAAAAAAGTAAAAATTAATAATTTTATA
TAAAATTAAATAAAAATATCATTTGAATTTATTTTTAAATGATTTAATAATTAAATAACA
----------
Length of 5' end seq. 480
3' end seq. ID SSC451Z
3' end seq. 
>SSC451Z.Seq
----------AAATTTANTTAAAATTTCNTTTGGATTTTTTTTTTAATGGTTTTTTTTTT
TAATTAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAATAATCTTTAAGAAAGCTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 149
Connected seq. ID SSC451P
Connected seq. 
>SSC451P.Seq
CAACAAACAAAAAAAAAAAAAATTTAAATTTTTTACAAAAAAATGGCAGCATTAGAAAAT
TTTTTAATTTTAAGAGATGGAATTAACCAATCAAAATTTATGGAAATGTTTGAAAAATTT
TTTCATGAAAATGTTGTAATGATCCAAAATGGAGCCATCATAGAGGGAAAAGCCAAAAAT
AGAGAAATCCAAGAAAACTTTATTAAAAACTCTGTTATTCATGAAATTAAAATTGTTTCA
TTTGAAGAAAGGGGAGACACTATTGTTTATCAAATGGTAATGAATTTTGAAATTGGTGGT
CATGTAATTAACAAAAACCAAGAGGTTCATCAAACTTGGGAATATGATAAAGTTATTAGA
GAATTATATGTTTAGAAAAAAGTAAAAAAGAAAAAAAAAGTAAAAATTAATAATTTTATA
TAAAATTAAATAAAAATATCATTTGAATTTATTTTTAAATGATTTAATAATTAAATAACA
----------AAATTTANTTAAAATTTCNTTTGGATTTTTTTTTTAATGGTTTTTTTTTT
TAATTAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAATAATCTTTAAGAAAGCTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 629
Full length Seq ID -
Full length Seq. -
Length of full length seq. -