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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC446
Library SS
(Link to library)
Clone ID SSC446
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14332-1
Original site URL
Representative seq. ID SSC446F
(Link to Original site)
Representative DNA sequence 
>SSC446 (SSC446Q) /CSM/SS/SSC4-B/SSC446Q.Seq.d/
TAAAAACATTAAAAAAAAACTATAGTTTTTTAAAAAATTATTTATTACATTATTTATTTA
AATAAAAACTTTCATTGTCAAATTTTTAAAATATTAAAATAAAATGTTATTCAAATCATT
AAATCAATTATTCAACTCTTCATTATCATCAATGAATTCATCATCAGTTGTAAATTCATC
ATCAACATTAAATGTTTCATTTGATTTAAATTCCATTCAAGGTACAAATAAATATTATAA
CAGTATTTTTACTCGTCCACAAATGTATCAATGTTAAAAACATATATATATAAATATATA
ATTXXXXXXXXXX
sequence update 1998.12. 2
Translated Amino Acid sequence 
knikkkl*ffkklfitlfi*iktfivkflky*NKMLFKSLNQLFNSSLSSMNSSSVVNSS
STLNVSFDLNSIQGTNKYYNSIFTRPQMYQC*khiyini*---
Translated Amino Acid sequence (All Frames) 
Frame A:
*kh*kktivf*kiiyyiiylnknfhcqifkilk*nviqiiksiiqlfiiinefiisckfi
inikcfi*fkfhsryk*il*qyfysstnvsmlktyiykyi---


Frame B:
knikkkl*ffkklfitlfi*iktfivkflky*NKMLFKSLNQLFNSSLSSMNSSSVVNSS
STLNVSFDLNSIQGTNKYYNSIFTRPQMYQC*khiyini*---


Frame C:
ktlkknysflknyllhylfk*klslsnf*nikikcysnh*inystlhyhq*ihhql*ihh
qh*mfhli*ipfkvqiniitvfllvhkcinvkniyi*iyn---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC446 (SSC446Q) /CSM/SS/SSC4-B/SSC446Q.Seq.d/                        351   4e-96
CHH566 (CHH566Q) /CSM/CH/CHH5-C/CHH566Q.Seq.d/                        343   1e-93
SSD502 (SSD502Q) /CSM/SS/SSD5-A/SSD502Q.Seq.d/                        280   1e-74
SSC753 (SSC753Q) /CSM/SS/SSC7-C/SSC753Q.Seq.d/                        236   2e-61
SSL592 (SSL592Q) /CSM/SS/SSL5-D/SSL592Q.Seq.d/                        176   1e-43
SSA289 (SSA289Q) /CSM/SS/SSA2-D/SSA289Q.Seq.d/                        105   4e-22
SSM557 (SSM557Q) /CSM/SS/SSM5-C/SSM557Q.Seq.d/                         40   0.019
SSL225 (SSL225Q) /CSM/SS/SSL2-B/SSL225Q.Seq.d/                         40   0.019
SHJ818 (SHJ818Q) /CSM/SH/SHJ8-A/SHJ818Q.Seq.d/                         40   0.019
SHJ718 (SHJ718Q) /CSM/SH/SHJ7-A/SHJ718Q.Seq.d/                         40   0.019
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.   228  2e-59  8
AL445223|AL445223.6 Human DNA sequence from clone RP11-573N10 on chromosome 13 Contains  STSs and GSSs.    52  0.004  1
AC022669|AC022669.4 Homo sapiens chromosome 15 clone RP11-96B23 map 15, WORKING DRAFT SEQUENCE, 33 unordered pieces.    52  0.022  2
M82937|M82937.1 Candida albicans chitin synthase 2 (CHS2) gene, complete cds.    46  0.25  1
AC134086|AC134086.2 Rattus norvegicus clone CH230-429A14, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.    48  0.35  4
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          36  0.54  6
AL162413|AL162413.26 Human DNA sequence from clone RP11-109M17 on chromosome 9.    44  0.98  1
AL426441|AL426441.1 clone BA0AB013A01 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    44  0.98  1
BX546494|BX546494.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-118A3.    44  0.98  1
BX218495|BX218495.1 Danio rerio genomic clone DKEY-271N18, genomic survey sequence.    44  0.98  1
dna update 2003. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116960_29(AC116960|pid:none) Dictyostelium discoideum chromoso...    52   6e-06
AJ010592_154(AJ010592|pid:none) Guillardia theta DNA for complet...    35   0.62
AC116305_148(AC116305|pid:none) Dictyostelium discoideum chromos...    35   1.0
protein update 2009. 1.27
PSORT 

 psg: 0.83  gvh: 0.50  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.51  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for SSC446 is mit
5' end seq. ID SSC446F
5' end seq. 
>SSC446F.Seq
TAAAAACATTAAAAAAAAACTATAGTTTTTTAAAAAATTATTTATTACATTATTTATTTA
AATAAAAACTTTCATTGTCAAATTTTTAAAATATTAAAATAAAATGTTATTCAAATCATT
AAATCAATTATTCAACTCTTCATTATCATCAATGAATTCATCATCAGTTGTAAATTCATC
ATCAACATTAAATGTTTCATTTGATTTAAATTCCATTCAAGGTACAAATAAATATTATAA
CAGTATTTTTACTCGTCCACAAATGTATCAATGTTAAAAACATATATATATAAATATATA
ATT----------
Length of 5' end seq. 303
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -