>SSC438 (SSC438Q) /CSM/SS/SSC4-B/SSC438Q.Seq.d/
ATTTAACAACAACAAAATGTCAGATAACGAAGCTTTAGATGTCGAAGACTACGCCCAAGC
CGGTTCAGGTGCTTCATTAACCTTCCCAATTCAATGTTCAGCATTAAGAAAGAACGGTTT
CGTCGTCATTAAAGGTTTCCCATGTAAGATTGTTGATATGTCAACTTCCAAAACCGGTAA
ACACGGTCACGCCAAAGTTAACATCACTGCTATCGATATCTTCACTGGTAAGAAATACGA
AGAAATTTGCCCATCAACTCACAACATTGATGTACCAAATGTCAGCAGAAAGGAATACAC
CGTTATGGATGTTCAAGATGGTTACTTATCACTCTTGGATGCTGGTGGTGAAGTCAAAGA
AGATCTTGCCCTCCCAGAAGATGATATTGGTAAAGAAATTACCCAAATGTTAAAAGAAGG
TAAAGAGCCATTAGTTTCAGTCATCTCTGCTTTAGGTAAAGAAGGTGTCGTCTCTGTTAA
AGTCAGCAACAATTAAATTGTTTAAAATTCTCTTTATAAAAAAAAAA

FNNNKMSDNEALDVEDYAQAGSGASLTFPIQCSALRKNGFVVIKGFPCKIVDMSTSKTGK
HGHAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDVQDGYLSLLDAGGEVKE
DLALPEDDIGKEITQMLKEGKEPLVSVISALGKEGVVSVKVSNN*iv*nslykkk

Frame A:
i*qqqnvr*rsfrcrrlrpsrfrcfinlpnsmfsikkerfrrh*rfpm*dc*yvnfqnr*
trsrqs*hhcyrylhw*eirrnlpinsqh*ctkcqqkgihrygcsrwllitlgcww*sqr
rscpprr*yw*rnypnvkrr*raisfshlcfr*rrcrlc*sqqqlnclkfsl*kk


Frame B:
FNNNKMSDNEALDVEDYAQAGSGASLTFPIQCSALRKNGFVVIKGFPCKIVDMSTSKTGK
HGHAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDVQDGYLSLLDAGGEVKE
DLALPEDDIGKEITQMLKEGKEPLVSVISALGKEGVVSVKVSNN*iv*nslykkk


Frame C:
ltttkcqitkl*mskttpkpvqvlh*psqfnvqh*ertvssslkvshvrllicqlpkpvn
tvtpkltsllsisslvrntkkfahqlttlmyqmsaerntplwmfkmvtyhswmlvvkskk
ilpsqkmilvkklpkc*kkvksh*fqssll*vkkvssllksatiklfkilfikkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG552 (VSG552Q) /CSM/VS/VSG5-C/VSG552Q.Seq.d/                       1025   0.0
VSE527 (VSE527Q) /CSM/VS/VSE5-B/VSE527Q.Seq.d/                       1025   0.0
VHD324 (VHD324Q) /CSM/VH/VHD3-A/VHD324Q.Seq.d/                       1025   0.0
SSC438 (SSC438Q) /CSM/SS/SSC4-B/SSC438Q.Seq.d/                       1025   0.0
SLE525 (SLE525Q) /CSM/SL/SLE5-B/SLE525Q.Seq.d/                       1025   0.0
FC-AH24 (FC-AH24Q) /CSM/FC/FC-AH/FC-AH24Q.Seq.d/                     1025   0.0
SSD486 (SSD486Q) /CSM/SS/SSD4-D/SSD486Q.Seq.d/                       1019   0.0
VSD284 (VSD284Q) /CSM/VS/VSD2-D/VSD284Q.Seq.d/                       1017   0.0
SSL858 (SSL858Q) /CSM/SS/SSL8-C/SSL858Q.Seq.d/                       1017   0.0
SLC576 (SLC576Q) /CSM/SL/SLC5-D/SLC576Q.Seq.d/                       1017   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X14970|X14970.1 Dictyostelium discoideum mRNA for translation initiation factor  eIF-4D.  1009  0.0  1
AX001144|AX001144.1 Sequence 5 from Patent WO9901551.            967  0.0  1
AR228401|AR228401.1 Sequence 5 from patent US 6448040.           967  0.0  1
AL424567|AL424567.1 T3 end of clone XAZ0AA001B09 of library XAZ0AA from strain CBS 712  of Kluyveromyces marxianus.   129  4e-26  1
J05455|J05455.1 S.cerevisiae ANB1 locus encoding protein synthesis initiation factor (eIF-4D) gene, complete cds.   103  7e-23  2
Z49547|Z49547.1 S.cerevisiae chromosome X reading frame ORF YJR047c.   103  8e-23  2
X56235|X56235.1 Yeast (S.cerevisiae) HYP1 gene for hypusine containing protein HP1.   103  8e-23  2
U07366|U07366.1 Candida albicans translation initiation factor eIF-5A (TIF51) gene, complete cds.    78  4e-22  3
L36344|L36344.1 Saccharomyces cerevisiae tRNA-Met, tRNA-Ser, tRNA-Gly genes and 24 ORFs.   103  1e-21  2
M63542|M63542.1 S.cerevisiae initiation factor 5A (TIF51B) gene, complete cds.    96  5e-21  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P10160) RecName: Full=Eukaryotic translation initiation factor ...   199   3e-50
AL596185_11(AL596185|pid:none) Mouse DNA sequence from clone RP2...   198   8e-50
(P63241) RecName: Full=Eukaryotic translation initiation factor ...   198   8e-50
AY129319_1(AY129319|pid:none) Homo sapiens eukaryotic initiation...   198   8e-50
BC070048_1(BC070048|pid:none) Homo sapiens eukaryotic translatio...   196   2e-49
(Q6IS14) RecName: Full=Eukaryotic translation initiation factor ...   196   2e-49
S72024_1(S72024|pid:none) eif-5A=eukaryotic initiation factor 5A...   196   3e-49
BT075853_1(BT075853|pid:none) Caligus rogercresseyi clone crog-e...   194   1e-48
BT082977_1(BT082977|pid:none) Anoplopoma fimbria clone afim-evh-...   194   1e-48
(Q07460) RecName: Full=Eukaryotic translation initiation factor ...   193   2e-48

 psg: 0.75  gvh: 0.61  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSC438 is cyt

>SSC438E.Seq
ATTTAACAACAACAAAATGTCAGATAACGAAGCTTTAGATGTCGAAGACTACGCCCAAGC
CGGTTCAGGTGCTTCATTAACCTTCCCAATTCAATGTTCAGCATTAAGAAAGAACGGTTT
CGTCGTCATTAAAGGTTTCCCATGTAAGATTGTTGATATGTCAACTTCCAAAACCGGTAA
ACACGGTCACGCCAAAGTTAACATCACTGCTATCGATATCTTCACTGGTAAGAAATACGA
AGAAATTTGCCCATCAACTCACAACATTGATGTACCAAATGTCAGCAGAAAGGAATACAC
CGTTATGGATGTTCAAGATGGTTACTTATCACTCTTGGATGCTGGTGGTGAAGTCAAAGA
AGATCTTGCCCTCCCAGAAGATGATATTGGTAAAGAAATTACCCAAATGTTAAAAGAAGG
TAAAGAGCCATTAGTTTCAGTCATCTCTGCTTTAGGTAAAGAAGGTGTCGTCTCTGTTAA
AGTCAGCAACAATTAAATTGTTTAAAATTCTCTTTATAAAAAAAAAA