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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC434
Library SS
(Link to library)
Clone ID SSC434
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13145-1|Contig-U15669-1
Original site URL
Representative seq. ID SSC434P
(Link to Original site)
Representative DNA sequence 
>SSC434 (SSC434Q) /CSM/SS/SSC4-B/SSC434Q.Seq.d/
AAGAGGAGGAGGAAGAGGATAGTCAACAACATAATACAAGTATGAATAGTAATGGTGGTA
AACCATCAATAAACGATAGAGATGAGCAGGGTAGAACACCATTAATGTTTGCCAATACAG
TTATGACAGCACAATTTCTATTGAATAGAGGTGCAAGAATTAATTTACGTGATAGTGAAC
GTCAAACTGCAATGCATAAAGCATCAATGTACAATATACCCGATTTGTTATCACTCTATT
TGAATACAGGCGCACACATAAAAAGAGATTTATCAGGTTGTACACCACTTCATATTTGTT
CATATAAAGGTTTCATCAATTGCACTCAAGTTATGATGGAGAAAGGTCCAAGAAGAGTTA
AAGCTGAAGCACGTGATAAAAAAGGTAAAACTGCACTTCATTATGCTGCTGAATCACCTG
AATCCGATGAAATCACTGCTCAAGTTATTAATATTTTAGCATCAGGTGGTTCATTATTAG
ATACAAAAGATAGAGAAAAGAAAACACCATTACATTTTTCAACATTAATGGGTAAAGTTA
AATCAGTTAATGTTTTATTAGAGAAAGGAGCAAATCCAGAAGTTGTTGATATATTTGGAG
CATTACCATTACATTATGCAGTTACATGTATAACTGGTAGAAAGATAGCAAAACAATTGA
TTGCAAAAGGATGTAAAGTGAATTCACCTGATAATGTTGGTCAAACACCAATGTTTTXXX
XXXXXXXTGAATATATGCATGCAGATATTTATGGATTTTTACCAGATGTTTCATCAAATG
CAGCACAAATGAAAAAATGGGGTGAAATTAAAGAATNTTNTCAACAGTTAATGAAAGAAC
AAAGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998.12. 2
Translated Amino Acid sequence 
EEEEEDSQQHNTSMNSNGGKPSINDRDEQGRTPLMFANTVMTAQFLLNRGARINLRDSER
QTAMHKASMYNIPDLLSLYLNTGAHIKRDLSGCTPLHICSYKGFINCTQVMMEKGPRRVK
AEARDKKGKTALHYAAESPESDEITAQVINILASGGSLLDTKDREKKTPLHFSTLMGKVK
SVNVLLEKGANPEVVDIFGALPLHYAVTCITGRKIAKQLIAKGCKVNSPDNVGQTPMF--
-

---EYMHADIYGFLPDVSSNAAQMKKWGEIKEXXQQLMKEQRNKKKKKKKKKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
krrrkrivnniiqv*ivmvvnhq*tiemsrvehh*clpiql*qhnfy*ievqeliyvivn
vklqcikhqctiypicyhsi*iqaht*keiyqvvhhfifvhikvssialkl*wrkvqeel
klkhvikkvklhfimllnhlnpmksllkllif*hqvvhy*iqkiekrkhhyifqh*wvkl
nqlmfy*rkeqiqklliylehyhyimqlhv*lver*qnn*lqkdvk*ihlimlvkhqcf-
--

---*iyacrylwiftrcfikcstnekmg*n*rxxstvnertkk*kkkkkkkkkkkk

Frame B:
rgggrg*stt*ykye**ww*tinkr*r*ag*ntinvcqysydstisie*rckn*ft***t
sncna*sinvqytrfvitlfeyrrthkkrfirlyttsylfi*rfhqlhssydgerskks*
s*st**kr*nctslcc*it*ir*nhcssy*yfsirwfiirykr*rkentitffning*s*
is*cfirersksrsc*yiwsititlcsymynw*kdsktidckrm*seft**cwsntnv--
-

---EYMHADIYGFLPDVSSNAAQMKKWGEIKEXXQQLMKEQRNKKKKKKKKKKKKK

Frame C:
EEEEEDSQQHNTSMNSNGGKPSINDRDEQGRTPLMFANTVMTAQFLLNRGARINLRDSER
QTAMHKASMYNIPDLLSLYLNTGAHIKRDLSGCTPLHICSYKGFINCTQVMMEKGPRRVK
AEARDKKGKTALHYAAESPESDEITAQVINILASGGSLLDTKDREKKTPLHFSTLMGKVK
SVNVLLEKGANPEVVDIFGALPLHYAVTCITGRKIAKQLIAKGCKVNSPDNVGQTPMF--
-

---nicmqifmdfyqmfhqmqhk*kngvklknxxns**knkeikkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC434 (SSC434Q) /CSM/SS/SSC4-B/SSC434Q.Seq.d/                       1610   0.0
CHR142 (CHR142Q) /CSM/CH/CHR1-B/CHR142Q.Seq.d/                       1065   0.0
SLD528 (SLD528Q) /CSM/SL/SLD5-B/SLD528Q.Seq.d/                        258   1e-67
SSC437 (SSC437Q) /CSM/SS/SSC4-B/SSC437Q.Seq.d/                        139   8e-32
VHM227 (VHM227Q) /CSM/VH/VHM2-B/VHM227Q.Seq.d/                         44   0.004
VHK512 (VHK512Q) /CSM/VH/VHK5-A/VHK512Q.Seq.d/                         44   0.004
VHG835 (VHG835Q) /CSM/VH/VHG8-B/VHG835Q.Seq.d/                         44   0.004
VHC312 (VHC312Q) /CSM/VH/VHC3-A/VHC312Q.Seq.d/                         44   0.004
SHJ194 (SHJ194Q) /CSM/SH/SHJ1-D/SHJ194Q.Seq.d/                         44   0.004
SHC595 (SHC595Q) /CSM/SH/SHC5-D/SHC595Q.Seq.d/                         44   0.004
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BW244829|BW244829.1 Ciona intestinalis cDNA, clone:citb065n07, 5' end, single read.    48  0.19  1
BW047672|BW047672.1 Ciona intestinalis cDNA, clone:cibd062e09, 5' end, single read.    48  0.19  1
U41034|U41034.1 Caenorhabditis elegans cosmid M02D8.    48  0.19  1
AK112157|AK112157.1 Ciona intestinalis cDNA, clone:cieg021i06, full insert sequence.    48  0.19  1
AC112125|AC112125.9 Rattus norvegicus clone CH230-170I18, WORKING DRAFT SEQUENCE, 10 unordered pieces.    40  0.30  2
AC107964|AC107964.4 Homo sapiens chromosome 8, clone CTD-2328I8, complete sequence.    32  0.30  6
AC113517|AC113517.5 Mus musculus clone RP23-477C12, WORKING DRAFT SEQUENCE, 7 unordered pieces.    38  0.40  6
AC125270|AC125270.2 Mus musculus clone RP24-150L20, WORKING DRAFT SEQUENCE, 20 unordered pieces.    36  0.64  3
AC111055|AC111055.4 Mus musculus clone RP24-502H14, WORKING DRAFT SEQUENCE, 10 ordered pieces.    38  0.65  2
AC018511|AC018511.5 Homo sapiens chromosome 10 clone RP11-77G23, complete sequence.    40  0.65  2
dna update 2003. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR392368_2(CR392368|pid:none) Zebrafish DNA sequence from clone ...   106   1e-21
CP001404_1850(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51...   106   1e-21
AM999887_1278(AM999887|pid:none) Wolbachia endosymbiont of Culex...   103   8e-21
CP001230_365(CP001230|pid:none) Persephonella marina EX-H1, comp...   102   2e-20
CP001230_364(CP001230|pid:none) Persephonella marina EX-H1, comp...    99   1e-19
(Q54KA7) RecName: Full=Ankyrin repeat, PH and SEC7 domain contai...    97   9e-19
CP001102_1320(CP001102|pid:none) Candidatus Amoebophilus asiatic...    93   1e-17
AK126888_1(AK126888|pid:none) Homo sapiens cDNA FLJ44940 fis, cl...    93   1e-17
BC106948_1(BC106948|pid:none) Homo sapiens ankyrin repeat domain...    93   1e-17
(O15084) RecName: Full=Serine/threonine-protein phosphatase 6 re...    93   1e-17
protein update 2009. 6. 9
PSORT 

 psg: 0.75  gvh: 0.36  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.09  mip: 0.00
 nuc: 0.46  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSC434 is nuc
5' end seq. ID SSC434F
5' end seq. 
>SSC434F.Seq
AAGAGGAGGAGGAAGAGGATAGTCAACAACATAATACAAGTATGAATAGTAATGGTGGTA
AACCATCAATAAACGATAGAGATGAGCAGGGTAGAACACCATTAATGTTTGCCAATACAG
TTATGACAGCACAATTTCTATTGAATAGAGGTGCAAGAATTAATTTACGTGATAGTGAAC
GTCAAACTGCAATGCATAAAGCATCAATGTACAATATACCCGATTTGTTATCACTCTATT
TGAATACAGGCGCACACATAAAAAGAGATTTATCAGGTTGTACACCACTTCATATTTGTT
CATATAAAGGTTTCATCAATTGCACTCAAGTTATGATGGAGAAAGGTCCAAGAAGAGTTA
AAGCTGAAGCACGTGATAAAAAAGGTAAAACTGCACTTCATTATGCTGCTGAATCACCTG
AATCCGATGAAATCACTGCTCAAGTTATTAATATTTTAGCATCAGGTGGTTCATTATTAG
ATACAAAAGATAGAGAAAAGAAAACACCATTACATTTTTCAACATTAATGGGTAAAGTTA
AATCAGTTAATGTTTTATTAGAGAAAGGAGCAAATCCAGAAGTTGTTGATATATTTGGAG
CATTACCATTACATTATGCAGTTACATGTATAACTGGTAGAAAGATAGCAAAACAATTGA
TTGCAAAAGGATGTAAAGTGAATTCACCTGATAATGTTGGTCAAACACCAATGTTTT---
-------
Length of 5' end seq. 717
3' end seq. ID SSC434Z
3' end seq. 
>SSC434Z.Seq
----------TGAATATATGCATGCAGATATTTATGGATTTTTACCAGATGTTTCATCAA
ATGCAGCACAAATGAAAAAATGGGGTGAAATTAAAGAATNTTNTCAACAGTTAATGAAAG
AACAAAGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 160
Connected seq. ID SSC434P
Connected seq. 
>SSC434P.Seq
AAGAGGAGGAGGAAGAGGATAGTCAACAACATAATACAAGTATGAATAGTAATGGTGGTA
AACCATCAATAAACGATAGAGATGAGCAGGGTAGAACACCATTAATGTTTGCCAATACAG
TTATGACAGCACAATTTCTATTGAATAGAGGTGCAAGAATTAATTTACGTGATAGTGAAC
GTCAAACTGCAATGCATAAAGCATCAATGTACAATATACCCGATTTGTTATCACTCTATT
TGAATACAGGCGCACACATAAAAAGAGATTTATCAGGTTGTACACCACTTCATATTTGTT
CATATAAAGGTTTCATCAATTGCACTCAAGTTATGATGGAGAAAGGTCCAAGAAGAGTTA
AAGCTGAAGCACGTGATAAAAAAGGTAAAACTGCACTTCATTATGCTGCTGAATCACCTG
AATCCGATGAAATCACTGCTCAAGTTATTAATATTTTAGCATCAGGTGGTTCATTATTAG
ATACAAAAGATAGAGAAAAGAAAACACCATTACATTTTTCAACATTAATGGGTAAAGTTA
AATCAGTTAATGTTTTATTAGAGAAAGGAGCAAATCCAGAAGTTGTTGATATATTTGGAG
CATTACCATTACATTATGCAGTTACATGTATAACTGGTAGAAAGATAGCAAAACAATTGA
TTGCAAAAGGATGTAAAGTGAATTCACCTGATAATGTTGGTCAAACACCAATGTTTT---
-------TGAATATATGCATGCAGATATTTATGGATTTTTACCAGATGTTTCATCAAATG
CAGCACAAATGAAAAAATGGGGTGAAATTAAAGAATNTTNTCAACAGTTAATGAAAGAAC
AAAGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 877
Full length Seq ID -
Full length Seq. -
Length of full length seq. -