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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC432
Library SS
(Link to library)
Clone ID SSC432
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04672-1
Original site URL
Representative seq. ID SSC432E
(Link to Original site)
Representative DNA sequence 
>SSC432 (SSC432Q) /CSM/SS/SSC4-B/SSC432Q.Seq.d/
ATAAAATTAAAGAGATAATTAAAAAAAATAAAAAATAAAAAAATAAAATAAAATATAAAA
TAAAATAAAATAATATAAAAAGATAATTGTATAATAGATAGATTATGCTATAGAAATGGC
AATAACAAATGCATATTATGATTATTCACATATAGCATTAATTTCTTTATATACAATATT
AGCTATTTTATCAATAATAAGTTTTATAAGATCAACGACCAAAAAAAATATTTTTATAAT
ATCTTTTCATATAGTTTTACTTATAGCGTCATTATTAAGGGCGGTATCATTTTCACTTTT
NNNAANAAANGANGAAAANGTTAAAGAAACTNGATGGTAATCNATTGNTTCNAACNAATG
AATTNCCTAGTCNNTTTTNATTTAACCTNTTTNTCAATGGCTTTACTTTTATCAATTCAA
ATTTTTCAAGGAACATTAGTAGNTAAAGCAGTAGATATGCCAAAAATNAAAAACAGTTGT
CATTATTGCAAATGTTGTTATTTATTTAATACTGGCAATTTTATNCATTTTGGATTTTGT
ATTATTTCCATATGAAACAGCATCAGTTGATCAACCAACTTCAGTTTTTCAAATGATCAT
ACAATTCATTGCAGCTNTTATTTATTTTATTACTGCTGTTACTTTCTTTGTATTTTTATT
TAAAACTTATTATGAACATTATGATGATAAATTTGCAGATGCAGTTAAAACACAAGAATC
TGTACAACTTAAAAAGAGAAGTAATGGAATTATATNTTTNTCATTTTTATGTTTTTTAAT
TAGGGCCATAATGACATGTTTGACAATATTTTTGAAATTGGGTTTTTGGTATAAGGATTT
AGTATATTATCTTTTCTTTGAAATCATTCCAATCAGTCTTTTACTTTTTATCATCAATGA
AATGACATATAAAGCTGGAAATATTGTTTTTGGTGGTCATCAATATTCTGAAGTAACCGA
AAATTCAAGATTAACTGAAACTTCCAATTATTTAATTGCTAAATATTCAAATTCTCAAAT
TTCAAATATTAATAAATAATAATTTATTATGAATAAAATGGGATTTTGTGTTGAAAATAT
TAATAAATATACT
sequence update 1999. 6.18
Translated Amino Acid sequence 
*n*rdn*kk*kikk*nki*nkik*ykkiiv**idyaiemaitnayydyshialislytil
ailsiisfirsttkknifiisfhivlliasllravsfslxxxxxexvketxw*sixsnx*
ix*sxxi*pxxqwlyfyqfkffkeh**xkq*ICQKXKTVVIIANVVIYLILAILXILDFV
LFPYETASVDQPTSVFQMIIQFIAAXIYFITAVTFFVFLFKTYYEHYDDKFADAVKTQES
VQLKKRSNGIIXXSFLCFLIRAIMTCLTIFLKLGFWYKDLVYYLFFEIIPISLLLFIINE
MTYKAGNIVFGGHQYSEVTENSRLTETSNYLIAKYSNSQISNINK**fimnkmgfcveni
nkyt
Translated Amino Acid sequence (All Frames) 
Frame A:
iklkr*lkkiknkkik*nik*nkii*kdnciidrlcyrngnnkcil*lftysinffiyni
syfinnkfykindqkkyfynifsysftysviikggiiftfxxkxxkx*rnxmvixxfxxm
nxlvxfxltxxsmalllsiqifqgtlvxkavdmpkxknschyckccylfntgnfxhfgfc
iisi*nsis*stnfsfsndhtihcsxylfyyccyflcifi*nll*tl***icrcs*ntri
ctt*kek*wnyxfxifmffn*ghndmfdnifeigflv*gfsilsfl*nhsnqsftfyhq*
ndi*swkycfwwssif*snrkfkin*nfqlfnc*ifkfsnfky**iiiyye*ngilc*ky
**iy


Frame B:
*n*rdn*kk*kikk*nki*nkik*ykkiiv**idyaiemaitnayydyshialislytil
ailsiisfirsttkknifiisfhivlliasllravsfslxxxxxexvketxw*sixsnx*
ix*sxxi*pxxqwlyfyqfkffkeh**xkq*ICQKXKTVVIIANVVIYLILAILXILDFV
LFPYETASVDQPTSVFQMIIQFIAAXIYFITAVTFFVFLFKTYYEHYDDKFADAVKTQES
VQLKKRSNGIIXXSFLCFLIRAIMTCLTIFLKLGFWYKDLVYYLFFEIIPISLLLFIINE
MTYKAGNIVFGGHQYSEVTENSRLTETSNYLIAKYSNSQISNINK**fimnkmgfcveni
nkyt


Frame C:
kikeiikknkk*knkikykik*nnikr*lynr*iml*kwq*qmhimiihi*h*flyiqy*
lfyq**vl*dqrpkkifl*ylfi*fyl*rhy*gryhfhfxxxxxkxlkkldgnxlxxtne
xpsxfxfnlfxngftfinsnfsrnisx*ssryaknxkqlsllqmllfi*ywqfyxfwily
yfhmkqhqlinqlqffk*synslqllfillllllslyfylklimnimminlqmqlkhknl
ynlkrevmelyxxhfyvf*lgp**hv*qyf*nwvfgiri*yiifslksfqsvfyflssmk
*hikleilflvvinilk*pkiqd*lklpii*llniqilkfqilinnnll*ikwdfvlkil
ini
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC432 (SSC432Q) /CSM/SS/SSC4-B/SSC432Q.Seq.d/                        817   0.0
AFL694 (AFL694Q) /CSM/AF/AFL6-D/AFL694Q.Seq.d/                        559   e-158
SSC265 (SSC265Q) /CSM/SS/SSC2-C/SSC265Q.Seq.d/                        396   e-109
VSE204 (VSE204Q) /CSM/VS/VSE2-A/VSE204Q.Seq.d/                         36   1.1
VSD554 (VSD554Q) /CSM/VS/VSD5-C/VSD554Q.Seq.d/                         36   1.1
VFD350 (VFD350Q) /CSM/VF/VFD3-C/VFD350Q.Seq.d/                         36   1.1
VFC431 (VFC431Q) /CSM/VF/VFC4-B/VFC431Q.Seq.d/                         36   1.1
VFB740 (VFB740Q) /CSM/VF/VFB7-B/VFB740Q.Seq.d/                         36   1.1
SSF560 (SSF560Q) /CSM/SS/SSF5-C/SSF560Q.Seq.d/                         36   1.1
FC-BR12 (FC-BR12Q) /CSM/FC/FC-BR/FC-BR12Q.Seq.d/                       36   1.1
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC107135|AC107135.4 Rattus norvegicus clone CH230-43J15, *** SEQUENCING IN PROGRESS ***, 35 unordered pieces.    52  0.015  1
AC107109|AC107109.4 Rattus norvegicus clone CH230-16K10, *** SEQUENCING IN PROGRESS ***, 23 unordered pieces.    52  0.015  1
BH109156|BH109156.1 RPCI-24-401O23.TJ RPCI-24 Mus musculus genomic clone RPCI-24-401O23 , DNA sequence.    50  0.058  1
AC124706|AC124706.3 Mus musculus chromosome UNK clone RP24-69G17, WORKING DRAFT SEQUENCE, 3 unordered pieces.    50  0.086  4
AC018928|AC018928.1 Genomic Sequence For Arabidopsis thaliana Clone F23C08, Chromosome V, complete sequence.    46  0.19  2
AC018787|AC018787.5 Homo sapiens, clone RP11-22O12, complete sequence.    38  0.43  3
AC015558|AC015558.9 Homo sapiens chromosome 15 clone RP11-301A18, WORKING DRAFT SEQUENCE, 1 unordered pieces.    38  0.45  6
AE001153|AE001153.1 Borrelia burgdorferi (section 39 of 70) of the complete genome.    38  0.49  2
AL807250|AL807250.9 Mouse DNA sequence from clone RP23-99K18 on chromosome X.    34  0.91  6
BH241135|BH241135.1 AUILG57TR AUIL Arabidopsis thaliana genomic clone AUILG57, DNA sequence.    46  0.91  1
dna update 2003. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT052100_1(BT052100|pid:none) Medicago truncatula clone MTYF9_FA...    46   0.003
AB193041_1(AB193041|pid:none) Solanum lycopersicum LeTH1 mRNA fo...    45   0.004
BT038476_1(BT038476|pid:none) Zea mays full-length cDNA clone ZM...    44   0.008
EU963263_1(EU963263|pid:none) Zea mays clone 260042 unknown mRNA.      44   0.010
BT041243_1(BT041243|pid:none) Zea mays full-length cDNA clone ZM...    44   0.010
H84433(H84433)hypothetical protein At2g02180 [imported] - Arabid...    44   0.013
AB036427_1(AB036427|pid:none) Arabidopsis thaliana mRNA for TOM3...    44   0.013
AB057678_1(AB057678|pid:none) Arabidopsis thaliana mRNA for THH1...    42   0.029
AC010657_3(AC010657|pid:none) Genomic sequence for Arabidopsis t...    42   0.029
EU975512_1(EU975512|pid:none) Zea mays clone 491224 unknown mRNA.      42   0.029
protein update 2009. 7. 6
PSORT 

 psg: 0.95  gvh: 0.51  alm: 0.15  top: 0.13  tms: 0.27  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for SSC432 is end
5' end seq. ID SSC432F
5' end seq. 
>SSC432F.Seq
ATAAAATTAAAGAGATAATTAAAAAAAATAAAAAATAAAAAAATAAAATAAAATATAAAA
TAAAATAAAATAATATAAAAAGATAATTGTATAATAGATAGATTATGCTATAGAAATGGC
AATAACAAATGCATATTATGATTATTCACATATAGCATTAATTTCTTTATATACAATATT
AGCTATTTTATCAATAATAAGTTTTATAAGATCAACGACCAAAAAAAATATTTTTATAAT
ATCTTTTCATATAGTTTTACTTATAGCGTCATTATTAAGGGCGGTATCATTTTCACTTTT
TATAATAAATGAAGAAAAAGTTAAAGAAATTGATGGTAATCTATTGTTTCTAACAAATGA
ATTACCTAGTTTTTTTTATTTAACCTTTTTTTCAATGGCTTTACTTTTATCAATTCAAAT
TTTTCAAGGAACATTAGTAGTTAAAGCAGTAGATATGCAAAAATTAAAAACAGTTGTCAT
TATTGCAAATGTTGTTATTTATTTAATACTGGCAATTTTATTCATTTTGGATTTTGTATT
ATTTCCATATGAAACAGCATCAGTTGATCAACCAACTTCAGTTTTTCAAATGATCATACA
ATTCATTGCAGCTTTTATTTAT----------
Length of 5' end seq. 622
3' end seq. ID SSC432Z
3' end seq. 
>SSC432Z.Seq
----------ATAANAAAACGAGGAAAAGGNTAAAGNAACTCGATGGTAANCCATTGGTT
CCAACCAATGAATTCCCTAGNCCCTNNTCATTTAACCTCTTTCTCAATGGCTTTACTTTT
ATCAATTCAAATTTTTCAAGGAACATTAGTAGGTAAAGCAGTAGATANGCCAAAAATCAA
AAACAGTTGTCATTATGCAAATGTNGTNATTTATTTAATACTGGCAATTTTACCATTTTG
GATTTTGTATTATTNCCATATGAAACAGCATCAGTTGATCAACCAACTTCAGTTTTTCAA
ATGATCATACAATTCATTGCAGCTCTTATTTATTTTATTACTGCTGTTACTTTCTTTGTA
TTTTTATTTAAAACTTATTATGAACATTATGATGATAAATTTGCAGATGCAGTTAAAACA
CAAGAATCTGTACAACTTAAAAAGAGAAGTAATGGAATTATATNTTTNTCATTTTTATGT
TTTTTAATTAGGGCCATAATGACATGTTTGACAATATTTTTGAAATTGGGTTTTTGGTAT
AAGGATTTAGTATATTATCTTTTCTTTGAAATCATTCCAATCAGTCTTTTACTTTTTATC
ATCAATGAAATGACATATAAAGCTGGAAATATTGTTTTTGGTGGTCATCAATATTCTGAA
GTAACCGAAAATTCAAGATTAACTGAAACTTCCAATTATTTAATTGCTAAATATTCAAAT
TCTCAAATTTCAAATATTAATAAATAATAATTTATTATGAATAAAATGGGATTTTGTGTT
GAAAATATTAATAAATATACT
Length of 3' end seq. 791
Connected seq. ID SSC432P
Connected seq. 
>SSC432P.Seq
ATAAAATTAAAGAGATAATTAAAAAAAATAAAAAATAAAAAAATAAAATAAAATATAAAA
TAAAATAAAATAATATAAAAAGATAATTGTATAATAGATAGATTATGCTATAGAAATGGC
AATAACAAATGCATATTATGATTATTCACATATAGCATTAATTTCTTTATATACAATATT
AGCTATTTTATCAATAATAAGTTTTATAAGATCAACGACCAAAAAAAATATTTTTATAAT
ATCTTTTCATATAGTTTTACTTATAGCGTCATTATTAAGGGCGGTATCATTTTCACTTTT
TATAATAAATGAAGAAAAAGTTAAAGAAATTGATGGTAATCTATTGTTTCTAACAAATGA
ATTACCTAGTTTTTTTTATTTAACCTTTTTTTCAATGGCTTTACTTTTATCAATTCAAAT
TTTTCAAGGAACATTAGTAGTTAAAGCAGTAGATATGCAAAAATTAAAAACAGTTGTCAT
TATTGCAAATGTTGTTATTTATTTAATACTGGCAATTTTATTCATTTTGGATTTTGTATT
ATTTCCATATGAAACAGCATCAGTTGATCAACCAACTTCAGTTTTTCAAATGATCATACA
ATTCATTGCAGCTTTTATTTAT----------ATAANAAAACGAGGAAAAGGNTAAAGNA
ACTCGATGGTAANCCATTGGTTCCAACCAATGAATTCCCTAGNCCCTNNTCATTTAACCT
CTTTCTCAATGGCTTTACTTTTATCAATTCAAATTTTTCAAGGAACATTAGTAGGTAAAG
CAGTAGATANGCCAAAAATCAAAAACAGTTGTCATTATGCAAATGTNGTNATTTATTTAA
TACTGGCAATTTTACCATTTTGGATTTTGTATTATTNCCATATGAAACAGCATCAGTTGA
TCAACCAACTTCAGTTTTTCAAATGATCATACAATTCATTGCAGCTCTTATTTATTTTAT
TACTGCTGTTACTTTCTTTGTATTTTTATTTAAAACTTATTATGAACATTATGATGATAA
ATTTGCAGATGCAGTTAAAACACAAGAATCTGTACAACTTAAAAAGAGAAGTAATGGAAT
TATATNTTTNTCATTTTTATGTTTTTTAATTAGGGCCATAATGACATGTTTGACAATATT
TTTGAAATTGGGTTTTTGGTATAAGGATTTAGTATATTATCTTTTCTTTGAAATCATTCC
AATCAGTCTTTTACTTTTTATCATCAATGAAATGACATATAAAGCTGGAAATATTGTTTT
TGGTGGTCATCAATATTCTGAAGTAACCGAAAATTCAAGATTAACTGAAACTTCCAATTA
TTTAATTGCTAAATATTCAAATTCTCAAATTTCAAATATTAATAAATAATAATTTATTAT
GAATAAAATGGGATTTTGTGTTGAAAATATTAATAAATATACT
Length of connected seq. 1413
Full length Seq ID SSC432E
Full length Seq. 
>SSC432E.Seq
ATAAAATTAAAGAGATAATTAAAAAAAATAAAAAATAAAAAAATAAAATAAAATATAAAA
TAAAATAAAATAATATAAAAAGATAATTGTATAATAGATAGATTATGCTATAGAAATGGC
AATAACAAATGCATATTATGATTATTCACATATAGCATTAATTTCTTTATATACAATATT
AGCTATTTTATCAATAATAAGTTTTATAAGATCAACGACCAAAAAAAATATTTTTATAAT
ATCTTTTCATATAGTTTTACTTATAGCGTCATTATTAAGGGCGGTATCATTTTCACTTTT
NNNAANAAANGANGAAAANGTTAAAGAAACTNGATGGTAATCNATTGNTTCNAACNAATG
AATTNCCTAGTCNNTTTTNATTTAACCTNTTTNTCAATGGCTTTACTTTTATCAATTCAA
ATTTTTCAAGGAACATTAGTAGNTAAAGCAGTAGATATGCCAAAAATNAAAAACAGTTGT
CATTATTGCAAATGTTGTTATTTATTTAATACTGGCAATTTTATNCATTTTGGATTTTGT
ATTATTTCCATATGAAACAGCATCAGTTGATCAACCAACTTCAGTTTTTCAAATGATCAT
ACAATTCATTGCAGCTNTTATTTATTTTATTACTGCTGTTACTTTCTTTGTATTTTTATT
TAAAACTTATTATGAACATTATGATGATAAATTTGCAGATGCAGTTAAAACACAAGAATC
TGTACAACTTAAAAAGAGAAGTAATGGAATTATATNTTTNTCATTTTTATGTTTTTTAAT
TAGGGCCATAATGACATGTTTGACAATATTTTTGAAATTGGGTTTTTGGTATAAGGATTT
AGTATATTATCTTTTCTTTGAAATCATTCCAATCAGTCTTTTACTTTTTATCATCAATGA
AATGACATATAAAGCTGGAAATATTGTTTTTGGTGGTCATCAATATTCTGAAGTAACCGA
AAATTCAAGATTAACTGAAACTTCCAATTATTTAATTGCTAAATATTCAAATTCTCAAAT
TTCAAATATTAATAAATAATAATTTATTATGAATAAAATGGGATTTTGTGTTGAAAATAT
TAATAAATATACT
Length of full length seq. 1093