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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC418
Library SS
(Link to library)
Clone ID SSC418
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01562-1
Original site URL
Representative seq. ID SSC418E
(Link to Original site)
Representative DNA sequence 
>SSC418 (SSC418Q) /CSM/SS/SSC4-A/SSC418Q.Seq.d/
ATTTAAAGAATAATAATATTAGAGTGAATTCACTTCATCCTGGTTATTTAAGAACTCCAA
TAAATAGAGATTTAAGTTGGTTCACTAGACATATCATTGCACCAATATTCTTTTTTGGTT
ATGGTTCAAAAACTGAAGATACAATCAATGGAATTGTTAATTTAATTGAAAATAATTCAA
ATCATTCTGGTAAATATTTTTCAATTTCAAAAGAAATTTCACCTTCACCATTTGCTTCAA
ATCTTGAAAATTCTAAACTTTTATGGGAAAAAACTTGTGAATTACTTTCAATTAGTAATG
AATTAAATTTATAAAAAAAATAAAAATTAAAATAAAATATTATTAATATTTTTNTAGTAA
TCTTGTAATATTACATTTTTCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 3.31
Translated Amino Acid sequence 
LKNNNIRVNSLHPGYLRTPINRDLSWFTRHIIAPIFFFGYGSKTEDTINGIVNLIENNSN
HSGKYFSISKEISPSPFASNLENSKLLWEKTCELLSISNELNL*kk*klk*niinifxvi
l*yyifq*kkkkkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
i*riiile*ihfilvi*elq*iei*vgsldislhqysflvmvqklkiqsmelli*lkiiq
iilvnifqfqkkfhlhhllqilkilnfygkklvnyfqlvmn*iykknkn*nkillifx**
scnitffnkkkkkkkkkkkkkkkkkkk


Frame B:
fke**y*seftsswlfknsnk*rfklvh*tyhctnilfwlwfkn*rynqwnc*fn*k*fk
sfw*iffnfkrnftfticfks*kf*tfmgknl*itfn***ikfikkikikikyy*yfxsn
lvilhfsikkkkkkkkkkkkkkkkkkk


Frame C:
LKNNNIRVNSLHPGYLRTPINRDLSWFTRHIIAPIFFFGYGSKTEDTINGIVNLIENNSN
HSGKYFSISKEISPSPFASNLENSKLLWEKTCELLSISNELNL*kk*klk*niinifxvi
l*yyifq*kkkkkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC418 (SSC418Q) /CSM/SS/SSC4-A/SSC418Q.Seq.d/                        617   e-176
SSE620 (SSE620Q) /CSM/SS/SSE6-A/SSE620Q.Seq.d/                        611   e-174
SSB630 (SSB630Q) /CSM/SS/SSB6-B/SSB630Q.Seq.d/                        545   e-154
SSM702 (SSM702Q) /CSM/SS/SSM7-A/SSM702Q.Seq.d/                         40   0.028
VSA557 (VSA557Q) /CSM/VS/VSA5-C/VSA557Q.Seq.d/                         38   0.11
VHL447 (VHL447Q) /CSM/VH/VHL4-B/VHL447Q.Seq.d/                         38   0.11
VHL278 (VHL278Q) /CSM/VH/VHL2-D/VHL278Q.Seq.d/                         38   0.11
VHI576 (VHI576Q) /CSM/VH/VHI5-D/VHI576Q.Seq.d/                         38   0.11
VHI157 (VHI157Q) /CSM/VH/VHI1-C/VHI157Q.Seq.d/                         38   0.11
VHC278 (VHC278Q) /CSM/VH/VHC2-D/VHC278Q.Seq.d/                         38   0.11
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    44  0.004  12
AL672161|AL672161.18 Zebrafish DNA sequence from clone BUSM1-1I3 in linkage group 11  Contains part of a novel gene similar to human CADPS (Ca2+ dependent activator protein for secretion) and a CpG island.    38  0.006  7
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    32  0.045  12
AF362369|AF362369.2 Dictyostelium discoideum histidine kinase DhkG (dhkG) gene, complete cds.    34  0.048  5
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36  0.13  13
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    44  0.13  12
AC141801|AC141801.1 Apis mellifera clone CH224-61C20, WORKING DRAFT SEQUENCE, 28 unordered pieces.    40  0.22  5
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    40  0.22  9
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          38  0.24  10
AP003515|AP003515.1 Clostridium perfringens plasmid pCP13 DNA, complete sequence.    30  0.31  9
dna update 2003. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC082500_1(BC082500|pid:none) Xenopus tropicalis retinol dehydro...    54   2e-06
BC073189_1(BC073189|pid:none) Xenopus laevis MGC80425 protein, m...    51   1e-05
AM930554_1(AM930554|pid:none) Bos taurus partial mRNA for retino...    47   2e-04
AK034180_1(AK034180|pid:none) Mus musculus adult male diencephal...    47   2e-04
(Q8CEE7) RecName: Full=Retinol dehydrogenase 13;          EC=1.1...    47   2e-04
BC118441_1(BC118441|pid:none) Bos taurus retinol dehydrogenase 1...    47   2e-04
BT051640_1(BT051640|pid:none) Medicago truncatula clone MTYF5_F6...    46   4e-04
FN375969_1(FN375969|pid:none) Schistosoma mansoni genome sequenc...    46   5e-04
BC155169_1(BC155169|pid:none) Danio rerio zgc:91936, mRNA (cDNA ...    45   0.001
BC078374_1(BC078374|pid:none) Danio rerio zgc:91936, mRNA (cDNA ...    45   0.001
protein update 2009. 7. 6
PSORT 

 psg: 0.74  gvh: 0.34  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 12.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SSC418 is mit
5' end seq. ID SSC418F
5' end seq. 
>SSC418F.Seq
ATTTAAAGAATAATAATATTAGAGTGAATTCACTTCATCCTGGTTATTTAAGAACTCCAA
TAAATAGAGATTTAAGTTGGTTCACTAGACATATCATTGCACCAATATTCTTTTTTGGTT
ATGGTTCAAAAACTGAAGATACAATCAATGGAATTGTTAATTTAATTGAAAATAATTCAA
ATCATTCTGGTAAATATTTTTCAATTTCAAAAGAAATTTCACCTTCACCATTTGCTTCAA
ATCTTGAAAATTCTAAACTTTTATGGGAAAAAACTTGTGAATTACTTTCAATTAGTAATG
AATTAAATTTATAAAAAAAATAAAAATTAAAATAAAATATTATTAACAAGATATTTTTAT
AGTAATCTTGTAATATTACATTTTTCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 5' end seq. 448
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID SSC418P
Connected seq. 
>SSC418P.Seq
ATTTAAAGAATAATAATATTAGAGTGAATTCACTTCATCCTGGTTATTTAAGAACTCCAA
TAAATAGAGATTTAAGTTGGTTCACTAGACATATCATTGCACCAATATTCTTTTTTGGTT
ATGGTTCAAAAACTGAAGATACAATCAATGGAATTGTTAATTTAATTGAAAATAATTCAA
ATCATTCTGGTAAATATTTTTCAATTTCAAAAGAAATTTCACCTTCACCATTTGCTTCAA
ATCTTGAAAATTCTAAACTTTTATGGGAAAAAACTTGTGAATTACTTTCAATTAGTAATG
AATTAAATTTATAAAAAAAATAAAAATTAAAATAAAATATTATTAACAAGATATTTTTAT
AGTAATCTTGTAATATTACATTTTTCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA----------TNTTTTTTTAGTAATCTTGTAA
TATTACATTTTTCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
Length of connected seq. 545
Full length Seq ID SSC418E
Full length Seq. 
>SSC418E.Seq
ATTTAAAGAATAATAATATTAGAGTGAATTCACTTCATCCTGGTTATTTAAGAACTCCAA
TAAATAGAGATTTAAGTTGGTTCACTAGACATATCATTGCACCAATATTCTTTTTTGGTT
ATGGTTCAAAAACTGAAGATACAATCAATGGAATTGTTAATTTAATTGAAAATAATTCAA
ATCATTCTGGTAAATATTTTTCAATTTCAAAAGAAATTTCACCTTCACCATTTGCTTCAA
ATCTTGAAAATTCTAAACTTTTATGGGAAAAAACTTGTGAATTACTTTCAATTAGTAATG
AATTAAATTTATAAAAAAAATAAAAATTAAAATAAAATATTATTAATATTTTTNTAGTAA
TCTTGTAATATTACATTTTTCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 443