>SSC408 (SSC408Q) /CSM/SS/SSC4-A/SSC408Q.Seq.d/
CTTCAATGTTTATTTCTCTTGATAAGGATAAGGATGGAATTATTTCAATAAAAGAGATTC
ATGGCCATAAGGCTGATGTTGCTGCAAAGAAATTGCAAAAGGCAATTAACAACATCTGTA
ACAACTTCTTGAAAGGCTATGACACTGATAAGGATGGAAGGATCTCATGGGATGAAGTAT
GCAATTGGGTAAATAAAAACAATCCAGATGCAATTGCTCCACTTATGATTGTTGAAAATT
TCTTTAGTGAATTGGATAAAGATAATGACAGATTCGTAACCAAGTGTGAACTTCAGGAGT
ACGTTACTAAATACAAAAGTCTCCCAGAACAATAAATAATTTATTGTTCAAATTCAATAA
TTATTAATCAACATTTATAATTTTCATTTTTAAAAAAATTTAAATAAATAAATAAATAAA
AAATAATCTTTTAAAAATA

SMFISLDKDKDGIISIKEIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRISWDEVC
NWVNKNNPDAIAPLMIVENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsii
inqhl*fsflkkfk*ink*kiif*k

Frame A:
lqclfllirirmelfq*krfmairlmllqrnckrqlttsvtts*kamtlirmegshgmky
aig*iktiqmqllhl*llkislvnwikimtds*psvnfrstllntkvsqnnk*fivqiq*
lliniynfhf*knlnk*inkk*sfkn


Frame B:
fnvyfs**g*gwnyfnkrdswp*g*ccckeiakgn*qhl*qllerl*h**gwkdlmg*sm
qlgk*kqsrcncstydc*kfl**ig*r**qirnqv*tsgvry*iqksprtinnllfkfnn
y*stfiififkki*ink*iknnllki


Frame C:
SMFISLDKDKDGIISIKEIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRISWDEVC
NWVNKNNPDAIAPLMIVENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsii
inqhl*fsflkkfk*ink*kiif*k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM673 (SSM673Q) /CSM/SS/SSM6-D/SSM673Q.Seq.d/                        704   0.0
SSM417 (SSM417Q) /CSM/SS/SSM4-A/SSM417Q.Seq.d/                        704   0.0
SSM408 (SSM408Q) /CSM/SS/SSM4-A/SSM408Q.Seq.d/                        704   0.0
SSM376 (SSM376Q) /CSM/SS/SSM3-D/SSM376Q.Seq.d/                        704   0.0
SSM294 (SSM294Q) /CSM/SS/SSM2-D/SSM294Q.Seq.d/                        704   0.0
SSM193 (SSM193Q) /CSM/SS/SSM1-D/SSM193Q.Seq.d/                        704   0.0
SSL192 (SSL192Q) /CSM/SS/SSL1-D/SSL192Q.Seq.d/                        704   0.0
SSL187 (SSL187Q) /CSM/SS/SSL1-D/SSL187Q.Seq.d/                        704   0.0
SSK881 (SSK881Q) /CSM/SS/SSK8-D/SSK881Q.Seq.d/                        704   0.0
SSK850 (SSK850Q) /CSM/SS/SSK8-C/SSK850Q.Seq.d/                        704   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X82784|X82784.1 D.discoideum mRNA for calcium binding protein.   704  0.0  1
AC116987|AC116987.2 Dictyostelium discoideum chromosome 2 map 3527441-3568052 strain AX4, complete sequence.   704  0.0  1
AC114604|AC114604.3 Mus musculus clone RP23-367L9, WORKING DRAFT SEQUENCE, 5 ordered pieces.    46  0.36  1
AC139135|AC139135.5 Mus musculus chromosome 9, clone RP24-360E17, complete sequence.    46  0.36  1
AC110201|AC110201.3 Mus musculus clone RP23-214G22, WORKING DRAFT SEQUENCE, 12 unordered pieces.    44  1.4  1
BH898487|BH898487.1 MB61p8A12 Mission Bay (San Diego, CA) uncultured virus community uncultured marine virus genomic clone MB61p8A12, DNA sequence.    44  1.4  1
BX546481|BX546481.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-60J4.    38  2.2  2
AC133671|AC133671.2 Rattus norvegicus clone CH230-223C7, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    36  2.7  4
AC099550|AC099550.5 Homo sapiens BAC clone RP11-484O2 from 4, complete sequence.    44  2.9  5
CB821823|CB821823.1 EST 2674 Half-Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone be004b19 3', mRNA sequence.    38  3.0  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ...    51   1e-05
(Q54RF4) RecName: Full=Calcium-binding protein 4a;                     51   1e-05
CR940353_624(CR940353|pid:none) Theileria annulata strain Ankara...    48   1e-04
EU181187_1(EU181187|pid:none) Triticum aestivum calcium-dependen...    45   0.001
FB335001_1(FB335001|pid:none) Sequence 2527 from Patent WO200711...    45   0.001
(Q62703) RecName: Full=Reticulocalbin-2; AltName: Full=Calcium-b...    44   0.002
AK169765_1(AK169765|pid:none) Mus musculus 2 days neonate thymus...    44   0.002
BT037517_1(BT037517|pid:none) Zea mays full-length cDNA clone ZM...    42   0.005
BT078078_1(BT078078|pid:none) Lepeophtheirus salmonis Pacific fo...    42   0.005
AX441389_1(AX441389|pid:none) Sequence 20 from Patent EP1209237....    42   0.005

 psg: 0.75  gvh: 0.25  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SSC408 is nuc

>SSC408E.Seq
CTTCAATGTTTATTTCTCTTGATAAGGATAAGGATGGAATTATTTCAATAAAAGAGATTC
ATGGCCATAAGGCTGATGTTGCTGCAAAGAAATTGCAAAAGGCAATTAACAACATCTGTA
ACAACTTCTTGAAAGGCTATGACACTGATAAGGATGGAAGGATCTCATGGGATGAAGTAT
GCAATTGGGTAAATAAAAACAATCCAGATGCAATTGCTCCACTTATGATTGTTGAAAATT
TCTTTAGTGAATTGGATAAAGATAATGACAGATTCGTAACCAAGTGTGAACTTCAGGAGT
ACGTTACTAAATACAAAAGTCTCCCAGAACAATAAATAATTTATTGTTCAAATTCAATAA
TTATTAATCAACATTTATAATTTTCATTTTTAAAAAAATTTAAATAAATAAATAAATAAA
AAATAATCTTTTAAAAATA