>SSC388 (SSC388Q) /CSM/SS/SSC3-D/SSC388Q.Seq.d/
XXXXXXXXXXAAATTNAAAGCCTCCTCGGTCATTCCAAAGAAGTAGATCAGTTAGTCACC
ACCAGTTGTGACTGGTAATAGCAAGATGCAATTGGTTCATTGGATACTATTTTAGAAAAG
GAGAGAAAGAGGGATGGAAATCCAAGATAGACAATTACCAATACTATTCACAAAGTGTGT
TGATTTCCTCTCAAATGATGAAGCTTTAAAAACTGAAGGTCTTTTTAGAGTTGCAGGTAA
TTCAAGTGAAGTTGAAGATTTAATGAAATCAATATTACTCTATGGTTCCGATATTCCAAG
TAATTGTTGTTATCATGTAGTTTCAAATATGTTAAAAAAGTTTTTACGTCAATTATCAAC
TCCAGTTTTCACTTTTAAATATCATAATGATTTCATCCAAACAATGAAATTAAATAATGA
TGAAGAAAGAATTAAAGCAATTAAAGAGATTTTAAAATTAATACCACCAGTTAATCAATT
ATTAATTAAAGAGTTGATGAAATTTTTAGTAAAAGTAACTAGTTTTTCAAATGTTAATAT
GATGCATGCTCATAATTTAGGTTTAATGTTTGGTCCAAATATGTTAAAGGCGCCATCAGA
TCCTGAAATGAATGCAATTTCAATGTTGGATGCTGGTAATCAAGTAATCACTTTATTAAT
TGAAAATTATAATTTATTTTATGATAATTAATATTTAATAATTAATTGATTAAAAATAAT
AATAAATTGAA

---xkassvipkk*is*sppvvtgnskmqlvhwilf*KRRERGMEIQDRQLPILFTKCVD
FLSNDEALKTEGLFRVAGNSSEVEDLMKSILLYGSDIPSNCCYHVVSNMLKKFLRQLSTP
VFTFKYHNDFIQTMKLNNDEERIKAIKEILKLIPPVNQLLIKELMKFLVKVTSFSNVNMM
HAHNLGLMFGPNMLKAPSDPEMNAISMLDAGNQVITLLIENYNLFYDN*yliin*lkiii
n*

Frame A:
---nxkpprsfqrsrsvshhql*lviarcnwfigyyfrkgekegwkskidnyqyysqsvl
issqmmkl*klkvflelqviqvklki**nqyysmvpifqvivvim*fqic*ksfyvnyql
qfsllniimisskq*n*immkkelkqlkrf*n*yhqliny*lks**nf**k*lvfqmli*
cmlii*v*clvqic*rrhqilk*mqfqcwmlvik*sly*lkiiiyfmiini**lid*k**
*ie


Frame B:
---ixsllghskevdqlvttscdw**qdaigsldtilekerkrdgnpr*titntihkvc*
fplk**sfkn*rsf*scr*fk*s*rfneinitlwfrysk*lllscsfkyvkkvftsiins
sfhf*is**fhpnneik***rkn*sn*rdfkintts*siin*rvdeifsksn*ffkc*yd
acs*frfnvwskyvkgairs*necnfnvgcw*ssnhfin*kl*fil**lifnn*liknnn
kl


Frame C:
---xkassvipkk*is*sppvvtgnskmqlvhwilf*KRRERGMEIQDRQLPILFTKCVD
FLSNDEALKTEGLFRVAGNSSEVEDLMKSILLYGSDIPSNCCYHVVSNMLKKFLRQLSTP
VFTFKYHNDFIQTMKLNNDEERIKAIKEILKLIPPVNQLLIKELMKFLVKVTSFSNVNMM
HAHNLGLMFGPNMLKAPSDPEMNAISMLDAGNQVITLLIENYNLFYDN*yliin*lkiii
n*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC388 (SSC388Q) /CSM/SS/SSC3-D/SSC388Q.Seq.d/                       1265   0.0
SSB571 (SSB571Q) /CSM/SS/SSB5-C/SSB571Q.Seq.d/                        640   0.0
SSM859 (SSM859Q) /CSM/SS/SSM8-C/SSM859Q.Seq.d/                        519   e-146
SFI683 (SFI683Q) /CSM/SF/SFI6-D/SFI683Q.Seq.d/                         42   0.012
CFH443 (CFH443Q) /CSM/CF/CFH4-B/CFH443Q.Seq.d/                         42   0.012
CFG831 (CFG831Q) /CSM/CF/CFG8-B/CFG831Q.Seq.d/                         42   0.012
VSK466 (VSK466Q) /CSM/VS/VSK4-C/VSK466Q.Seq.d/                         40   0.046
VSK184 (VSK184Q) /CSM/VS/VSK1-D/VSK184Q.Seq.d/                         40   0.046
SSK855 (SSK855Q) /CSM/SS/SSK8-C/SSK855Q.Seq.d/                         40   0.046
CFE478 (CFE478Q) /CSM/CF/CFE4-D/CFE478Q.Seq.d/                         40   0.046

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.   525  0.0  5
AC110321|AC110321.5 Rattus norvegicus clone CH230-272M10, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    32  0.15  7
AL390774|AL390774.10 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-417B4.    38  0.21  7
AP002398|AP002398.1 Homo sapiens genomic DNA, chromosome 18q21 clone:RP11-717C18, WORKING DRAFT SEQUENCE, 16 unordered pieces.    38  0.22  6
AF127001|AF127001.1 Astragalus sinicus chloroplast tRNA-Leu (trnL) gene, intron sequence.    38  0.39  2
BH987181|BH987181.1 oeh60f10.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    36  0.65  2
AE017031|AE017031.1 Bacillus anthracis str. Ames section 8 of 18 of the complete genome.    34  0.68  6
AC093544|AC093544.8 Medicago truncatula chloroplast, complete genome, complete sequence.    38  0.83  3
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    40  0.85  10
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    32  0.85  8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC047837_1(BC047837|pid:none) Danio rerio chimerin (chimaerin) 1...   108   2e-22
AY684586_1(AY684586|pid:none) Danio rerio chimaerin mRNA, comple...   108   2e-22
BC083540_1(BC083540|pid:none) Danio rerio chimerin (chimaerin) 1...   108   2e-22
AK006398_1(AK006398|pid:none) Mus musculus adult male testis cDN...   107   5e-22
(Q80XD1) RecName: Full=Beta-chimaerin; AltName: Full=Beta-chimer...   107   5e-22
AK160255_1(AK160255|pid:none) Mus musculus adult male testis cDN...   107   5e-22
BC051139_1(BC051139|pid:none) Mus musculus chimerin (chimaerin) ...   107   5e-22
(Q03070) RecName: Full=Beta-chimaerin; AltName: Full=Beta-chimer...   106   6e-22
BC114099_1(BC114099|pid:none) Bos taurus chimerin (chimaerin) 2,...   106   6e-22
EU732762_1(EU732762|pid:none) Homo sapiens beta chimaerin isofor...   105   1e-21

 psg: 0.72  gvh: 0.30  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSC388 is nuc

>SSC388Z.Seq
----------AAATTNAAAGCCTCCTCGGTCATTCCAAAGAAGTAGATCAGTTAGTCACC
ACCAGTTGTGACTGGTAATAGCAAGATGCAATTGGTTCATTGGATACTATTTTAGAAAAG
GAGAGAAAGAGGGATGGAAATCCAAGATAGACAATTACCAATACTATTCACAAAGTGTGT
TGATTTCCTCTCAAATGATGAAGCTTTAAAAACTGAAGGTCTTTTTAGAGTTGCAGGTAA
TTCAAGTGAAGTTGAAGATTTAATGAAATCAATATTACTCTATGGTTCCGATATTCCAAG
TAATTGTTGTTATCATGTAGTTTCAAATATGTTAAAAAAGTTTTTACGTCAATTATCAAC
TCCAGTTTTCACTTTTAAATATCATAATGATTTCATCCAAACAATGAAATTAAATAATGA
TGAAGAAAGAATTAAAGCAATTAAAGAGATTTTAAAATTAATACCACCAGTTAATCAATT
ATTAATTAAAGAGTTGATGAAATTTTTAGTAAAAGTAACTAGTTTTTCAAATGTTAATAT
GATGCATGCTCATAATTTAGGTTTAATGTTTGGTCCAAATATGTTAAAGGCGCCATCAGA
TCCTGAAATGAATGCAATTTCAATGTTGGATGCTGGTAATCAAGTAATCACTTTATTAAT
TGAAAATTATAATTTATTTTATGATAATTAATATTTAATAATTAATTGATTAAAAATAAT
AATAAATTGAA