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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC385
Library SS
(Link to library)
Clone ID SSC385
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSC385Z
(Link to Original site)
Representative DNA sequence 
>SSC385 (SSC385Q) /CSM/SS/SSC3-D/SSC385Q.Seq.d/
XXXXXXXXXXAAACGGNATTTAAAAAAAAANAAAAAATTGGAAAAAAAAAGGTTAAGGAT
GTAATGGTAAACCCAAAGTAGAATGGAAATCCAAAAAAGGATCTTTATAAATTGCCACTA
TAATCAATGTATAGATATTGTTCCGTCTGTGTGTATGCTGTTAGGTCCAGTTTGCTCTTT
AGTTNCTTTAATTTAAATCTATATTGTAATTTTTATAAAAAAAAAAAAAAGAAAAAAAAA
AACAAAAAAAAAAAGAAAAAAAGNNAAAATAATAATAATAATAATAATAATAATACAATA
AATTTAAATAAAAATAAAGAATAAACCTTATAGTGGGTTTACCAATTTATAAAAAAAAAA
AAAAAAA
sequence update 1997.11.25
Translated Amino Acid sequence 
---txfkkkxkigkkkvkdvmvnpk*ngnpkkdlyklpl*SMYRYCSVCVYAVRSSLLFS
XFNLNLYCNFYKKKKKKKKNKKKKKKXXNNNNNNNNNTINLNKNKE*tl*wvyqfikkkk
k
Translated Amino Acid sequence (All Frames) 
Frame A:
---ngi*kkxknwkkkg*gcngkpkvewkskkgsl*iatiinv*ilfrlcvcc*vqfal*
xl*fksil*fl*kkkkekkkqkkkekkxk********ynkfk*k*rinlivglpiykkkk
k


Frame B:
---txfkkkxkigkkkvkdvmvnpk*ngnpkkdlyklpl*SMYRYCSVCVYAVRSSLLFS
XFNLNLYCNFYKKKKKKKKNKKKKKKXXNNNNNNNNNTINLNKNKE*tl*wvyqfikkkk
k


Frame C:
---rxlkkxkklekkrlrm*w*tqsrmeiqkrifinchynqcidivpsvcmllgpvcslv
xli*iyivifikkkkrkkktkkkrkkxkiiiiiiiiiq*i*ikiknkpysgftnl*kkkk
k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC385 (SSC385Q) /CSM/SS/SSC3-D/SSC385Q.Seq.d/                        323   1e-87
SSJ363 (SSJ363Q) /CSM/SS/SSJ3-C/SSJ363Q.Seq.d/                        305   2e-82
SSC391 (SSC391Q) /CSM/SS/SSC3-D/SSC391Q.Seq.d/                        305   2e-82
SSC303 (SSC303Q) /CSM/SS/SSC3-A/SSC303Q.Seq.d/                        305   2e-82
SSL686 (SSL686Q) /CSM/SS/SSL6-D/SSL686Q.Seq.d/                        301   4e-81
SSE885 (SSE885Q) /CSM/SS/SSE8-D/SSE885Q.Seq.d/                        299   2e-80
SSM852 (SSM852Q) /CSM/SS/SSM8-C/SSM852Q.Seq.d/                        297   6e-80
SSM834 (SSM834Q) /CSM/SS/SSM8-B/SSM834Q.Seq.d/                        297   6e-80
SSM790 (SSM790Q) /CSM/SS/SSM7-D/SSM790Q.Seq.d/                        297   6e-80
SSM712 (SSM712Q) /CSM/SS/SSM7-A/SSM712Q.Seq.d/                        297   6e-80
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                   297  5e-77  1
AL277043|AL277043.1 Tetraodon nigroviridis genome survey sequence PUC-Ori end of clone  086M03 of library G from Tetraodon nigroviridis.    46  0.29  1
AC132603|AC132603.2 Mus musculus chromosome UNK clone RP24-66C10, WORKING DRAFT SEQUENCE, 10 unordered pieces.    44  1.2  1
AC122904|AC122904.2 Mus musculus chromosome 1 clone RP23-46H15, complete sequence.    44  1.2  1
AC137555|AC137555.2 Mus musculus chromosome UNK clone RP23-445B17, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44  1.2  1
AC094951|AC094951.5 Rattus norvegicus clone CH230-6H13, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    42  2.1  2
AC129804|AC129804.2 Homo sapiens clone RP11-637N16, WORKING DRAFT SEQUENCE, 7 unordered pieces.    42  4.6  1
AC102662|AC102662.2 Mus musculus clone RP23-144N11, WORKING DRAFT SEQUENCE, 6 unordered pieces.    42  4.6  1
AC020694|AC020694.4 Homo sapiens chromosome 17 clone RP11-637N15 map 17, WORKING DRAFT SEQUENCE, 21 unordered pieces.    42  4.6  1
AC095107|AC095107.6 Rattus norvegicus clone CH230-7H14, WORKING DRAFT SEQUENCE, 2 unordered pieces.    42  4.6  1
dna update 2003. 7.27
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 331,401,160
protein update 2009. 6. 9
PSORT 

 psg: 0.89  gvh: 0.50  alm: 0.39  top: 0.47  tms: 0.00  mit: 0.46  mip: 0.00
 nuc: 0.51  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: plasma membrane

>> prediction for SSC385 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSC385Z
3' end seq. 
>SSC385Z.Seq
----------AAACGGNATTTAAAAAAAAANAAAAAATTGGAAAAAAAAAGGTTAAGGAT
GTAATGGTAAACCCAAAGTAGAATGGAAATCCAAAAAAGGATCTTTATAAATTGCCACTA
TAATCAATGTATAGATATTGTTCCGTCTGTGTGTATGCTGTTAGGTCCAGTTTGCTCTTT
AGTTNCTTTAATTTAAATCTATATTGTAATTTTTATAAAAAAAAAAAAAAGAAAAAAAAA
AACAAAAAAAAAAAGAAAAAAAGNNAAAATAATAATAATAATAATAATAATAATACAATA
AATTTAAATAAAAATAAAGAATAAACCTTATAGTGGGTTTACCAATTTATAAAAAAAAAA
AAAAAAA
Length of 3' end seq. 357
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -