>SSC377 (SSC377Q) /CSM/SS/SSC3-D/SSC377Q.Seq.d/
XXXXXXXXXXCTTTTTTTTTAATTACTTGCAAGTTGANCNTCTTCATCTAANGAATTTAN
ANTNTTAATTAATTTTCCAAAAGAATCTTTTTCTTGTTGAGTTTTTGGTTCAGATTCAGT
TGACTCCATTTCTTCAGCCATATCTTGACGTTGTTTAATTAAATGACGATATAGACAAGC
CAATTCTTTTTCCAGTATGATTGGTGATTGTAAAGCCCCAGGTGGACAATCAGCAGGAAC
TGTTGAAAGAGTATTAATGAATGATTTCATATTTTCCATATTATCAATTCCGAAACGATT
CATATCTTTCATAAAGTCTTCTTTGTATTCCCCAAATTCTACTTGATTTGCCAAATTTTG
TAAGGTTTTTGCAATAAGAATGAGAGAACGAGTAGTTTTAATGCCTGGATGATCTGGCAT
TAGATCGAAAAGTTTTGGAGCTAAAATTGCAGGACAAAAGAAACGAAGGAAAATTAATTA
AAATTTTAAATTCTTTAGATGAAGATGTTCCACTTGCAAGTAATTAAAAAAAAAGAAAAT
AATAATAAAAAAAAAAAAAAAAAANACCAATATTATTTATCTATTTATATCTATATATAT
TATAATCAAAAAAAAAA

---ff*llas*xsssxefxxlinfpkesfsc*vfgsdsvdsissais*rclik*RYRQAN
SFSSMIGDCKAPGGQSAGTVERVLMNDFIFSILSIPKRFISFIKSSLYSPNST*fakfck
vfairmrervvlmpg*sgirsksfgakiagqkkrrkin*nfkffr*rcstck*lkkkkii
ikkkkkxtniiylfisiyiiikkk

Frame A:
---fffnylqvxxlhlxnlxx*lifqknlflveflvqiqltpflqpyldvv*lnddidkp
ilfpv*lvivkpqvdnqqellkey**misyfpyyqfrndsyls*sllcipqilldlpnfv
rflq*e*ene*f*clddlaldrkvlelklqdkrnegklikilnsldedvplasn*kkrk*
**kkkkkxpilfiylylyil*skkk


Frame B:
---fflitcklxxfi*xixxxn*fskriffllsfwfrfs*lhffshiltlfn*mti*tsq
fffqydw*l*sprwtisrnc*ksine*fhifhiinsetihifhkvffvfpkfylicqil*
gfcnknertssfnawmiwh*iekfws*ncrtketken*lkf*il*mkmfhlqvikkkenn
nkkkkkkxqyylsiyiyiyynqkk


Frame C:
---ff*llas*xsssxefxxlinfpkesfsc*vfgsdsvdsissais*rclik*RYRQAN
SFSSMIGDCKAPGGQSAGTVERVLMNDFIFSILSIPKRFISFIKSSLYSPNST*fakfck
vfairmrervvlmpg*sgirsksfgakiagqkkrrkin*nfkffr*rcstck*lkkkkii
ikkkkkxtniiylfisiyiiikkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC377 (SSC377Q) /CSM/SS/SSC3-D/SSC377Q.Seq.d/                        965   0.0
SSC371 (SSC371Q) /CSM/SS/SSC3-C/SSC371Q.Seq.d/                        841   0.0
AHM528 (AHM528Q) /CSM/AH/AHM5-B/AHM528Q.Seq.d/                        825   0.0
CFJ181 (CFJ181Q) /CSM/CF/CFJ1-D/CFJ181Q.Seq.d/                        803   0.0
VHK224 (VHK224Q) /CSM/VH/VHK2-A/VHK224Q.Seq.d/                        801   0.0
SHG618 (SHG618Q) /CSM/SH/SHG6-A/SHG618Q.Seq.d/                        789   0.0
AHE512 (AHE512Q) /CSM/AH/AHE5-A/AHE512Q.Seq.d/                        789   0.0
SHA252 (SHA252Q) /CSM/SH/SHA2-C/SHA252Q.Seq.d/                        781   0.0
AFL326 (AFL326Q) /CSM/AF/AFL3-B/AFL326Q.Seq.d/                        759   0.0
AHI639 (AHI639Q) /CSM/AH/AHI6-B/AHI639Q.Seq.d/                        755   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BH318648|BH318648.1 CH230-40N16.TV CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-40N16, DNA sequence.    46  0.002  2
BX548040|BX548040.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-190L11.    52  0.006  2
AL732500|AL732500.7 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-208J6.    52  0.024  3
BX469907|BX469907.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    48  0.024  2
AL837518|AL837518.17 Mouse DNA sequence from clone RP23-312M16 on chromosome 1.    42  0.028  2
AL034557|AL034557.8 Plasmodium falciparum MAL4P1.                 44  0.040  7
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    38  0.063  8
AC133471|AC133471.1 Homo sapiens clone RP13-681P1, WORKING DRAFT SEQUENCE, 2 ordered pieces.    40  0.072  3
AC087709|AC087709.2 Homo sapiens chromosome 3 clone RP11-795O24 map 3, WORKING DRAFT SEQUENCE, 12 ordered pieces.    38  0.086  5
BX072582|BX072582.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-222O19.    38  0.11  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM270115_10(AM270115|pid:none) Aspergillus niger contig An06c009...    91   2e-17
AM920437_405(AM920437|pid:none) Penicillium chrysogenum Wisconsi...    88   2e-16
AK088987_1(AK088987|pid:none) Mus musculus 2 days neonate thymus...    87   3e-16
AK030797_1(AK030797|pid:none) Mus musculus adult male thymus cDN...    87   3e-16
BC132341_1(BC132341|pid:none) Mus musculus RIKEN cDNA A430107D22...    87   3e-16
AK131128_1(AK131128|pid:none) Mus musculus mRNA for mFLJ00087 pr...    87   3e-16
(Q8C2K5) RecName: Full=Probable Ras GTPase-activating protein FL...    87   3e-16
(Q86YV0) RecName: Full=Probable Ras GTPase-activating protein FL...    85   1e-15
AX236295_1(AX236295|pid:none) Sequence 4 from Patent WO0164873.        85   1e-15
AK024488_1(AK024488|pid:none) Homo sapiens mRNA for FLJ00087 pro...    85   1e-15

 psg: 0.85  gvh: 0.48  alm: 0.40  top: 0.33  tms: 0.00  mit: 0.22  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SSC377 is cyt

>SSC377Z.Seq
----------CTTTTTTTTTAATTACTTGCAAGTTGANCNTCTTCATCTAANGAATTTAN
ANTNTTAATTAATTTT
CCAAAAGAATCTTTTTCTTGTTGAGTTTTTGGTTCAGATTCAG
TTGACTCCATTTCTTCAGCCATATCTTGACGTTGTTTAATTAAATGACGATATAGACAAG
CCAATTCTTTTTCCAGTATGATTGGTGATTGTAAAGCCCCAGGTGGACAATCAGCAGGAA
CTGTTGAAAGAGTATTAATGAATGATTTCATATTTTCCATATTATCAATTCCGAAACGAT
TCATATCTTTCATAAAGTCTTCTTTGTATTCCCCAAATTCTACTTGATTTGCCAAATTTT
GTAAGGTTTTTGCAATAAGAATGAGAGAACGAGTAGTTTTAATGCCTGGATGATCTGGCA
TTAGATCGAAAAGTTTTGGAGCTAAAATTGCAGGACAAAAGAAACGAAGGAAAATTAATT
AAAATTTTAAATTCTTTAGATGAAGATGTTCCACTTGCAAGTAATTAAAAAAAAAGAAAA
TAATAATAAAAAAAAAAAAAAAAAANACCAATATTATTTATCTATTTATATCTATATATA
TTATAATCAAAAAAAAAA