>SSC346 (SSC346Q) /CSM/SS/SSC3-B/SSC346Q.Seq.d/
XXXXXXXXXXAATTGCTGGTAAAATTCAAGTCATCTTTGGTCCAATGTTTAGCGGAAAGA
CCACTGAGCTCATTAGAAGAATTAAAAGATTTAATTTTGCAAACAAAAAATGCTTATTAA
TTAAATATAGTAAAGATACTAGATATAACGATAACATTGATAAATCATTTTTAGTTACCC
ATGACAAACAAAATTATCAAGCTTTCCCATTTTCAATTTTAGAAGATGTTAAAGAACAAG
CACAAAACTATGATGTAATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTGTACAAT
TTAGTGAAGACTTGGCAAATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGTACCT
TCCAAAGAAAACCATTCCAATCAGTCATTGATTTAGTATCAAAGGCTGAATATATTACAA
AGTTAACTGCCGTTTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACGTATCGTCG
AAAGTGATGATATCGAATTAATTGGTGGTATAGATAAATATATTTCCGTTTGCCGTGGTT
GCTACAATAGTGATCAAAATGAAGGAAATAGTACCAAACCAAGCAAAACCGCACGTCATT
CTCATTCTCAAAGCGCACCATCCGTTGCTCCACTTGCTGTAAACATTAATCCTGATGATC
ATTTAAATAATGATTATTAATTATGAAGATCCTAATTATATTTGTACATTATAAATTATA
ATCAA

---IAGKIQVIFGPMFSGKTTELIRRIKRFNFANKKCLLIKYSKDTRYNDNIDKSFLVTH
DKQNYQAFPFSILEDVKEQAQNYDVIGIDEGQFFPDVVQFSEDLANQGKTVIIAALDGTF
QRKPFQSVIDLVSKAEYITKLTAVCMVCYNEAAFSKRIVESDDIELIGGIDKYISVCRGC
YNSDQNEGNSTKPSKTARHSHSQSAPSVAPLAVNINPDDHLNNDY*l*rs*lylyiinyn
q

Frame A:
---IAGKIQVIFGPMFSGKTTELIRRIKRFNFANKKCLLIKYSKDTRYNDNIDKSFLVTH
DKQNYQAFPFSILEDVKEQAQNYDVIGIDEGQFFPDVVQFSEDLANQGKTVIIAALDGTF
QRKPFQSVIDLVSKAEYITKLTAVCMVCYNEAAFSKRIVESDDIELIGGIDKYISVCRGC
YNSDQNEGNSTKPSKTARHSHSQSAPSVAPLAVNINPDDHLNNDY*l*rs*lylyiinyn
q


Frame B:
---llvkfksslvqclaerplssleelkdlilqtknay*lnivkildititlinhf*lpm
tnkiiklshfqf*kmlknkhktmm*lvlmkanfsqtlynlvktwqikvkpl*lph*mvps
kenhsnqsli*yqrlnilqs*lpfvwfatmkppfqnvsskvmisn*lvv*inifpfavva
tivikmkeivpnqakphvililkahhpllhll*tlilmii*imiinyedpnyictl*iii


Frame C:
---cw*nsshlwsnv*rkdh*ah*kn*ki*fckqkmlin*i**ry*i*r*h**iifsyp*
qtklssfpifnfrrc*rtstkl*cnwy**rpifprrcti**rlgksr*nryncrtrwylp
kktipish*fsikg*iyykvncrlygllq*srlfktyrrk**yrinwwyr*iyfrlpwll
q**sk*rk*yqtkqnrtsfsfskrtircstcckh*s**sfk**llimkiliifvhykl*s

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC346 (SSC346Q) /CSM/SS/SSC3-B/SSC346Q.Seq.d/                       1417   0.0
SLH838 (SLH838Q) /CSM/SL/SLH8-B/SLH838Q.Seq.d/                       1403   0.0
SSC741 (SSC741Q) /CSM/SS/SSC7-B/SSC741Q.Seq.d/                       1360   0.0
SSI374 (SSI374Q) /CSM/SS/SSI3-D/SSI374Q.Seq.d/                       1310   0.0
SSF620 (SSF620Q) /CSM/SS/SSF6-A/SSF620Q.Seq.d/                       1291   0.0
VHQ109 (VHQ109Q) /CSM/VH/VHQ1-A/VHQ109Q.Seq.d/                       1283   0.0
VSJ693 (VSJ693Q) /CSM/VS/VSJ6-D/VSJ693Q.Seq.d/                       1253   0.0
VSI601 (VSI601Q) /CSM/VS/VSI6-A/VSI601Q.Seq.d/                       1239   0.0
SSA406 (SSA406Q) /CSM/SS/SSA4-A/SSA406Q.Seq.d/                       1152   0.0
SSD279 (SSD279Q) /CSM/SS/SSD2-D/SSD279Q.Seq.d/                       1150   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF510846|AF510846.1 Dictyostelium discoideum calmodulin-binding protein ThyB (thyB) mRNA, complete cds.  1409  0.0  1
U61990|U61990.1 Dictyostelium discoideum ThyB (thyB) mRNA, complete cds.  1350  0.0  1
CB888459|CB888459.1 taa92g08.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:KITH_CHICK P04047 THYMIDINE KINASE, CYTOSOLIC ;, mRNA sequence.    56  4e-06  2
BG661802|BG661802.1 kx06e10.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:KITH_CAPVK P16600 THYMIDINE KINASE ;, mRNA sequence.    44  0.002  2
AZ692494|AZ692494.1 ENTJU18TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48  0.004  2
AC111507|AC111507.5 Rattus norvegicus clone CH230-132D21, WORKING DRAFT SEQUENCE, 3 unordered pieces.    38  0.006  8
BQ089799|BQ089799.1 rc53b07.y2 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to SW:KITH_CAPVK P16600 THYMIDINE KINASE ;, mRNA sequence.    40  0.026  2
CB823884|CB823884.1 EST 5108 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh002g05 3', mRNA sequence.    50  0.038  1
CB823537|CB823537.1 EST 4761 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh006p21 3', mRNA sequence.    50  0.038  1
AC027323|AC027323.5 Homo sapiens chromosome 5 clone CTD-2034A10, complete sequence.    46  0.11  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04183) RecName: Full=Thymidine kinase, cytosolic;          EC=...   217   3e-55
AY335565_1(AY335565|pid:none) Synthetic construct Homo sapiens t...   217   3e-55
BT030694_1(BT030694|pid:none) Bos taurus thymidine kinase 1, sol...   216   4e-55
K02581_1(K02581|pid:none) Human thymidine kinase mRNA, complete ...   216   6e-55
AB451268_1(AB451268|pid:none) Homo sapiens TK1 mRNA for thymidin...   216   7e-55
AM905441_1(AM905441|pid:none) Suberites domuncula mRNA for thymi...   214   2e-54
(P04184) RecName: Full=Thymidine kinase, cytosolic;          EC=...   214   2e-54
(P09768) RecName: Full=Thymidine kinase, cytosolic;          EC=...   214   2e-54
M11945_1(M11945|pid:none) Mouse cytosolic thymidine kinase mRNA ...   214   3e-54
DQ441416_85(DQ441416|pid:none) Variola virus strain Benin, Dahom...   211   1e-53

 psg: 0.94  gvh: 0.30  alm: 0.44  top: 0.67  tms: 0.00  mit: 0.23  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: plasma membrane
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for SSC346 is cyt

>SSC346Z.Seq
----------AATTGCTGGTAAAATTCAAGTCATCTTTGGTCCAATGTTTAGCGGAAAGA
CCACTGAGCTCATTAGAAGAATTAAAAGATTTAATTTTGCAAACAAAAAATGCTTATTAA
TTAAATATAGTAAAGATACTAGATATAACGATAACATTGATAAATCATTTTTAGTTACCC
ATGACAAACAAAATTATCAAGCTTTCCCATTTTCAATTTTAGAAGATGTTAAAGAACAAG
CACAAAACTATGATGTAATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTGTACAAT
TTAGTGAAGACTTGGCAAATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGTACCT
TCCAAAGAAAACCATTCCAATCAGTCATTGATTTAGTATCAAAGGCTGAATATATTACAA
AGTTAACTGCCGTTTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACGTATCGTCG
AAAGTGATGATATCGAATTAATTGGTGGTATAGATAAATATATTTCCGTTTGCCGTGGTT
GCTACAATAGTGATCAAAATGAAGGAAATAGTACCAAACCAAGCAAAACCGCACGTCATT
CTCATTCTCAAAGCGCACCATCCGTTGCTCCACTTGCTGTAAACATTAATCCTGATGATC
ATTTAAATAATGATTATTAATTATGAAGATCCTAATTATATTTGTACATTATAAATTATA
ATCAA