>SSC343 (SSC343Q) /CSM/SS/SSC3-B/SSC343Q.Seq.d/
XXXXXXXXXXGGACACTGGTTTGAAAATTNTGGTTGGAAATCCATTCATGTGATTCTTTG
ACTATTGTAGATACCCAAACACTTACTTGCTCTGCTCCACCAGGAAGTGGTATTAAAAAT
GCTGTTTCATTCATGGTTAAAGATGCTGAATCAAAATTATCACCACCATTGTTCTTGGAT
TATAGTCCACCAACCATTATGTCATCAACAAGTGTAAAACAAGTTGAAGGTGGTCAAGTT
ACTATTTATGGTACCAATTTTGAAAATACTTTGATTACAGTAAATGTTGGAAGTAAATCA
TGTGAAGATGTTTCTGTAATGGATTCACCCAAACTTACTTGTTCAATTTCAAAATCACCA
ATGGATCCTTCATTAACAAATANGAAATTGGCCGTAAATGTTACTGTAAATGGTCAATCT
GCTAATGGTGAAGTATTTGAATATGATAATGAAGCACTCAATACTGAAACTCCTAAACCA
ACATTAGCACCAACTATAAAACCAACTGAAAAACCAACTGAAAAACCAACTGAAAAACCA
ACAACATCTCCAATAGATAAACACATTGAAAATAGTTCTTCTAAAATTTCTAATTCATTA
ATTTTAATTTTCTCATTATTATTACTAATCCAAATAATTTAAAAATAACCAAAAAAAAAA
TAAAAAAAAAAATAAAAAAAA

---tlv*KXWLEIHSCDSLTIVDTQTLTCSAPPGSGIKNAVSFMVKDAESKLSPPLFLDY
SPPTIMSSTSVKQVEGGQVTIYGTNFENTLITVNVGSKSCEDVSVMDSPKLTCSISKSPM
DPSLTNXKLAVNVTVNGQSANGEVFEYDNEALNTETPKPTLAPTIKPTEKPTEKPTEKPT
TSPIDKHIENSSSKISNSLILIFSLLLLIQII*k*pkkk*kkk*kk

Frame A:
---dtglkixvgnpfm*ffdycrypntyllcstrkwy*kccfihg*rc*ikiittivlgl
*stnhyvinkckts*rwssyylwyqf*kyfdyskcwk*im*rcfcngftqtylfnfkitn
gsfinkxeigrkcyckwsic*w*si*i***stqy*ns*tnistnyktn*ktn*ktn*ktn
nisnr*th*k*ff*nf*finfnfliiitnpnnlkitkkkikkkikk


Frame B:
---tlv*KXWLEIHSCDSLTIVDTQTLTCSAPPGSGIKNAVSFMVKDAESKLSPPLFLDY
SPPTIMSSTSVKQVEGGQVTIYGTNFENTLITVNVGSKSCEDVSVMDSPKLTCSISKSPM
DPSLTNXKLAVNVTVNGQSANGEVFEYDNEALNTETPKPTLAPTIKPTEKPTEKPTEKPT
TSPIDKHIENSSSKISNSLILIFSLLLLIQII*k*pkkk*kkk*kk


Frame C:
---hwfenxgwksihvil*ll*ipkhllallhqevvlkmlfhswlkmlnqnyhhhcswii
vhqplchqqv*nklkvvkllfmvpilkil*lq*mlevnhvkmfl*wihpnllvqfqnhqw
ilh*qixnwp*mll*mvnllmvkylnmimkhsilkllnqh*hql*nqlknqlknqlknqq
hlq*intlkivllkflih*f*fshyyy*sk*fknnqkknkkknkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC343 (SSC343Q) /CSM/SS/SSC3-B/SSC343Q.Seq.d/                        934   0.0
SLE667 (SLE667Q) /CSM/SL/SLE6-C/SLE667Q.Seq.d/                        870   0.0
SLA834 (SLA834Q) /CSM/SL/SLA8-B/SLA834Q.Seq.d/                        870   0.0
SHL869 (SHL869Q) /CSM/SH/SHL8-C/SHL869Q.Seq.d/                        870   0.0
SHL365 (SHL365Q) /CSM/SH/SHL3-C/SHL365Q.Seq.d/                        870   0.0
SHL288 (SHL288Q) /CSM/SH/SHL2-D/SHL288Q.Seq.d/                        870   0.0
SHK779 (SHK779Q) /CSM/SH/SHK7-D/SHK779Q.Seq.d/                        870   0.0
SHK674 (SHK674Q) /CSM/SH/SHK6-D/SHK674Q.Seq.d/                        870   0.0
SHK612 (SHK612Q) /CSM/SH/SHK6-A/SHK612Q.Seq.d/                        870   0.0
SHK454 (SHK454Q) /CSM/SH/SHK4-C/SHK454Q.Seq.d/                        870   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AZ823843|AZ823843.1 2M0098C08F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC2M0098C08 F, DNA sequence.    46  0.038  2
AC092676|AC092676.2 Homo sapiens BAC clone RP11-641E23 from 7, complete sequence.    38  0.10  5
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    40  0.20  8
AW375848|AW375848.1 RC3-CT0197-220999-022-A10 CT0197 Homo sapiens cDNA, mRNA sequence.    40  0.31  2
AC079526|AC079526.1 Mus musculus clone RP23-332K3, WORKING DRAFT SEQUENCE, 21 unordered pieces.    46  0.56  2
AE017005|AE017005.1 Bacillus cereus ATCC 14579 section 8 of 18 of the complete genome.    40  0.66  5
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36  0.92  9
AF538053|AF538053.1 Monosiga brevicollis mitochondrion, complete genome.    34  1.0  3
AC141611|AC141611.1 Homo sapiens chromosome 16 clone RP11-781D16, WORKING DRAFT SEQUENCE, 9 unordered pieces.    42  1.5  2
AC141297|AC141297.1 Homo sapiens chromosome 16 clone RP11-677C7, WORKING DRAFT SEQUENCE, 9 unordered pieces.    42  1.5  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117076_23(AC117076|pid:none) Dictyostelium discoideum chromoso...    76   1e-12
AC115598_15(AC115598|pid:none) Dictyostelium discoideum chromoso...    59   1e-07
AC116100_1(AC116100|pid:none) Dictyostelium discoideum chromosom...    55   3e-06
AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso...    49   1e-04
FJ374909_1(FJ374909|pid:none) Dictyostelium discoideum strain QS...    48   2e-04
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...    47   4e-04
FJ374971_1(FJ374971|pid:none) Dictyostelium discoideum strain AX...    47   5e-04
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...    46   0.001
FJ374905_1(FJ374905|pid:none) Dictyostelium discoideum strain QS...    46   0.001
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...    46   0.001

 psg: 0.75  gvh: 0.48  alm: 0.25  top: 0.50  tms: 0.07  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: plasma membrane
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSC343 is cyt

>SSC343Z.Seq
----------GGACACTGGTTTGAAAATTNTGGTTGGAAATCCATTCATGTGATTCTTTG
ACTATTGTAGATACCCAAACACTTACTTGCTCTGCTCCACCAGGAAGTGGTATTAAAAAT
GCTGTTTCATTCATGGTTAAAGATGCTGAATCAAAATTATCACCACCATTGTTCTTGGAT
TATAGTCCACCAACCATTATGTCATCAACAAGTGTAAAACAAGTTGAAGGTGGTCAAGTT
ACTATTTATGGTACCAATTTTGAAAATACTTTGATTACAGTAAATGTTGGAAGTAAATCA
TGTGAAGATGTTTCTGTAATGGATTCACCCAAACTTACTTGTTCAATTTCAAAATCACCA
ATGGATCCTTCATTAACAAATANGAAATTGGCCGTAAATGTTACTGTAAATGGTCAATCT
GCTAATGGTGAAGTATTTGAATATGATAATGAAGCACTCAATACTGAAACTCCTAAACCA
ACATTAGCACCAACTATAAAACCAACTGAAAAACCAACTGAAAAACCAACTGAAAAACCA
ACAACATCTCCAATAGATAAACACATTGAAAATAGTTCTTCTAAAATTTCTAATTCATTA
ATTTTAATTTTCTCATTATTATTACTAATCCAAATAATTTAAAAATAACCAAAAAAAAAA
TAAAAAAAAAAATAAAAAAAA