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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC336
Library SS
(Link to library)
Clone ID SSC336
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14396-1
Original site URL
Representative seq. ID SSC336E
(Link to Original site)
Representative DNA sequence 
>SSC336 (SSC336Q) /CSM/SS/SSC3-B/SSC336Q.Seq.d/
AATTAAAATAACTTAAATTATTAAATTTAAAAATGAAATTATTATTAGTTTTATTATCTC
TTCTTTTAACATTTTCAGTATTGGTACAATCTGAAGAAGCCTATTTTGCTTTAAAAACCT
ATCAAGACAATGATTTTATTTTCAAATTAACTGATTCAGAAAAAATACAAAAAGCCAGAG
ATATTTTGTCTGGAAAGGAAACTGAAGAAGTTCATGTAATGGGTAGAATTAGAAAGTCAA
ATAAAGACTATAATCCAAAGTATTCCTTTCATATTGACCCAGATACAGTCACATTTTTCA
GTATGGCCATTGAAGTTTGTGATGCTACAGCTAGTTATGTAGAAGATTACCTTGATGAGG
CCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGTCCATGGGCTTCAAAGCTAACAAAAG
AAATTAAAGTTTAAGAGTTAAATCAAATTAGCCATGATAAATCAAATTAAATAATTTTTA
AAAAAATTATTAATAAAGTTTTTTTTAACTAAAGTTTTTAT
sequence update 1997.11.26
Translated Amino Acid sequence 
lk*LKLLNLKMKLLLVLLSLLLTFSVLVQSEEAYFALKTYQDNDFIFKLTDSEKIQKARD
ILSGKETEEVHVMGRIRKSNKDYNPKYSFHIDPDTVTFFSMAIEVCDATASYVEDYLDEA
CGAFLPGCFWCPWASKLTKEIKV*elnqishdksn*iifkkiinkvffn*sfy
Translated Amino Acid sequence (All Frames) 
Frame A:
n*nnlny*i*k*nyy*fyylff*hfqywynlkkpill*kpiktmilfsn*liqkkykkpe
ifclerklkkfm*wvelesqiktiiqsipfiltqiqshfsvwplkfvmlqlvm*kitlmr
pvvlssqvasgvhglqs*qkklkfks*iklaminqik*flkkllikffltkvf


Frame B:
ikit*iikfkneiiisfiissfnifsigti*rslfcfknlsrq*fyfqin*frkntksqr
yfvwkgn*rsscng*n*kvk*rl*skvflsy*pryshifqygh*sl*cys*lcrrlp**g
lwcfpprlllvsmgfkankrn*slrvksn*p**iklnnf*kny**sff*lkfl


Frame C:
lk*LKLLNLKMKLLLVLLSLLLTFSVLVQSEEAYFALKTYQDNDFIFKLTDSEKIQKARD
ILSGKETEEVHVMGRIRKSNKDYNPKYSFHIDPDTVTFFSMAIEVCDATASYVEDYLDEA
CGAFLPGCFWCPWASKLTKEIKV*elnqishdksn*iifkkiinkvffn*sfy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM564 (SSM564Q) /CSM/SS/SSM5-C/SSM564Q.Seq.d/                        876   0.0
SSM346 (SSM346Q) /CSM/SS/SSM3-B/SSM346Q.Seq.d/                        876   0.0
SSK104 (SSK104Q) /CSM/SS/SSK1-A/SSK104Q.Seq.d/                        876   0.0
SSJ895 (SSJ895Q) /CSM/SS/SSJ8-D/SSJ895Q.Seq.d/                        876   0.0
SSI384 (SSI384Q) /CSM/SS/SSI3-D/SSI384Q.Seq.d/                        876   0.0
SSG802 (SSG802Q) /CSM/SS/SSG8-A/SSG802Q.Seq.d/                        876   0.0
SSG503 (SSG503Q) /CSM/SS/SSG5-A/SSG503Q.Seq.d/                        876   0.0
SSF786 (SSF786Q) /CSM/SS/SSF7-D/SSF786Q.Seq.d/                        876   0.0
SSF548 (SSF548Q) /CSM/SS/SSF5-B/SSF548Q.Seq.d/                        876   0.0
SSE839 (SSE839Q) /CSM/SS/SSE8-B/SSE839Q.Seq.d/                        876   0.0
own update 2004. 5.31
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C94197) Dictyostelium discoideum slug cDNA, clone SSK525.        801   0.0    2
(BJ391729) Dictyostelium discoideum cDNA clone:dds24p23, 5' ...   801   0.0    2
(AU038295) Dictyostelium discoideum slug cDNA, clone SSH528.      801   0.0    2
(C93085) Dictyostelium discoideum slug cDNA, clone SSF786.        801   0.0    2
(C90214) Dictyostelium discoideum slug cDNA, clone SSI384.        801   0.0    2
(C90743) Dictyostelium discoideum slug cDNA, clone SSJ895.        801   0.0    2
(AU039072) Dictyostelium discoideum slug cDNA, clone SSM346.      801   0.0    2
(C91344) Dictyostelium discoideum slug cDNA, clone SSK104.        801   0.0    2
(C89982) Dictyostelium discoideum slug cDNA, clone SSG802.        801   0.0    2
(C92628) Dictyostelium discoideum slug cDNA, clone SSF548.        801   0.0    2
dna update 2009. 7.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ...   202   3e-51
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com...   133   2e-30
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...   127   2e-28
CP001618_2965(CP001618|pid:none) Beutenbergia cavernae DSM 12333...    52   1e-05
AC115604_1(AC115604|pid:none) Dictyostelium discoideum chromosom...    45   0.001
CP000821_153(CP000821|pid:none) Shewanella sediminis HAW-EB3, co...    35   1.1
AM942759_131(AM942759|pid:none) Proteus mirabilis strain HI4320,...    33   4.2
DQ679966_3(DQ679966|pid:none) Enterobacter cloacae AcrR (acrR) g...    33   4.2
CP001279_735(CP001279|pid:none) Nautilia profundicola AmH, compl...    33   4.2
CP000653_936(CP000653|pid:none) Enterobacter sp. 638, complete g...    33   4.2
protein update 2009. 7. 6
PSORT 

 psg: 0.96  gvh: 0.86  alm: 0.44  top: 0.07  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	 12.0 %: vacuolar
	  8.0 %: Golgi
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial

>> prediction for SSC336 is exc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSC336E
Full length Seq. 
>SSC336E.Seq
AATTAAAATAACTTAAATTATTAAATTTAAAAATGAAATTATTATTAGTTTTATTATCTC
TTCTTTTAACATTTTCAGTATTGGTACAATCTGAAGAAGCCTATTTTGCTTTAAAAACCT
ATCAAGACAATGATTTTATTTTCAAATTAACTGATTCAGAAAAAATACAAAAAGCCAGAG
ATATTTTGTCTGGAAAGGAAACTGAAGAAGTTCATGTAATGGGTAGAATTAGAAAGTCAA
ATAAAGACTATAATCCAAAGTATTCCTTTCATATTGACCCAGATACAGTCACATTTTTCA
GTATGGCCATTGAAGTTTGTGATGCTACAGCTAGTTATGTAGAAGATTACCTTGATGAGG
CCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGTCCATGGGCTTCAAAGCTAACAAAAG
AAATTAAAGTTTAAGAGTTAAATCAAATTAGCCATGATAAATCAAATTAAATAATTTTTA
AAAAAATTATTAATAAAGTTTTTTTTAACTAAAGTTTTTAT
Length of full length seq. 521