SSC323
Library SS
(Link to library)
Clone ID SSC323
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16278-1
Original site URL
Representative seq. ID SSC323E
(Link to Original site)
Representative DNA sequence
>SSC323 (SSC323Q) /CSM/SS/SSC3-A/SSC323Q.Seq.d/
GANANCAATNTNATCACCAACNANNNCAATAGGCTNATTATCCCCTCATAAATCTTAATA
TTTTCTCAACAATAATTTTTTTTAATTTGTACAATGGGTCTCGCTTTTGGTAAACTTTTC
AGCCGTTTCTTTGGCAAAAAAGATATGAGAATTTTAATGGTCGGTTTAGATGCTGCTGGT
AAAACCACCATTTTATACAAACTTAAATTAGGTGAAATTGTTACTACAATTCCAACCATT
GGTTTCAATGTCGAAACTGTCGAATTCAAAAACATTAACTTCACTGTATGGGATGTTGGT
GGTCAAGATAAAATTCGTCCATTATGGAGACATTATTTCCAAAATACTCAAGGTCTTATC
TTTGTTGTTGATTCAAACGATAGAGAAAGAATTCAAGAAGCTTGTGATGAACTCACTAAA
ATGCTCAATGAAGATGAATTACGTGATGCTGTTTTATTAGTTTTCTGTAACAAACAAGAT
CTTCCAAATGCCATGAGTGTCGCTGAAGTTACCGATAAATTAAATCTCCACTCTCTCCGT
TCAAGAAAATGGTACATACAGTCAACTTGTGCCACCAGTGGTGATGGTTTATATGAAGGT
TTAGACTGGCTCTCAAATACCTTAACAAGCTCCTCAAAATAAATGACGTAGGAGGTCAAT
TTAATAGAGTTTATTAGATTTTTTAATTATTTAATAATCTAATTAAACTACTGTTGTTTA
ATTTTGAAATAAAAAAAAAAAAAACCTTGTTTATATAAATAAAAA
sequence update 1997.11.26
Translated Amino Acid sequence
xxnxitnxxnrliips*ilifsqq*FFLICTMGLAFGKLFSRFFGKKDMRILMVGLDAAG
KTTILYKLKLGEIVTTIPTIGFNVETVEFKNINFTVWDVGGQDKIRPLWRHYFQNTQGLI
FVVDSNDRERIQEACDELTKMLNEDELRDAVLLVFCNKQDLPNAMSVAEVTDKLNLHSLR
SRKWYIQSTCATSGDGLYEGLDWLSNTLTSSSK*mt*evnliefirffnylii*lnyccl
ilk*kkkkpclyk*k


Translated Amino Acid sequence (All Frames)
Frame A:
xxnxitnxxnrliips*ilifsqq*FFLICTMGLAFGKLFSRFFGKKDMRILMVGLDAAG
KTTILYKLKLGEIVTTIPTIGFNVETVEFKNINFTVWDVGGQDKIRPLWRHYFQNTQGLI
FVVDSNDRERIQEACDELTKMLNEDELRDAVLLVFCNKQDLPNAMSVAEVTDKLNLHSLR
SRKWYIQSTCATSGDGLYEGLDWLSNTLTSSSK*mt*evnliefirffnylii*lnyccl
ilk*kkkkpclyk*k


Frame B:
xxxxsptxxigxlsphks*yflnnnff*fvqwvsllvnfsavslakki*ef*wsv*mllv
kppfytnln*vklllqfqplvsmsklsnsktltslygmlvvkikfvhygdiiskilkvls
llliqtiekefkklvmnslkcsmkmnyvmlfy*fsvtnkifqmp*vslklpin*istlsv
qengtysqlvppvvmvymkv*tgsqip*qapqnk*rrrsi**slldflii**sn*ttvv*
f*nkkkknlvyink


Frame C:
xqxxhqxxq*axyplinlnifstiiffnlyngsrfw*tfqpflwqkryenfngrfrccw*
nhhfiqt*ir*ncyynsnhwfqcrncriqkh*lhcmgcwwsr*nssimetlfpkysrsyl
cc*fkr*rknsrsl**th*naq*r*it*ccfisfl*qtrsskchecr*syr*iksplspf
kkmvhtvnlchqw*wfi*rfrlalkylnkllkindvggqfnrvy*if*lfnnliklllfn
feikkkktlfi*ik


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSC323 (SSC323Q) /CSM/SS/SSC3-A/SSC323Q.Seq.d/ 1348 0.0
SSC884 (SSC884Q) /CSM/SS/SSC8-D/SSC884Q.Seq.d/ 1269 0.0
SSA191 (SSA191Q) /CSM/SS/SSA1-D/SSA191Q.Seq.d/ 1269 0.0
SLE250 (SLE250Q) /CSM/SL/SLE2-C/SLE250Q.Seq.d/ 1267 0.0
SSF795 (SSF795Q) /CSM/SS/SSF7-D/SSF795Q.Seq.d/ 1265 0.0
SSK773 (SSK773Q) /CSM/SS/SSK7-D/SSK773Q.Seq.d/ 1261 0.0
SSC436 (SSC436Q) /CSM/SS/SSC4-B/SSC436Q.Seq.d/ 1261 0.0
SSL113 (SSL113Q) /CSM/SS/SSL1-A/SSL113Q.Seq.d/ 1257 0.0
SSL154 (SSL154Q) /CSM/SS/SSL1-C/SSL154Q.Seq.d/ 1255 0.0
SSJ855 (SSJ855Q) /CSM/SS/SSJ8-C/SSJ855Q.Seq.d/ 1255 0.0

own update 2001. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU051887) Dictyostelium discoideum slug cDNA, clone SSC323. 1283 0.0 3
(AJ000063) Dictyostelium discoideum mRNA for ADP-ribosylatio... 1269 0.0 2
(C93981) Dictyostelium discoideum slug cDNA, clone SSC884. 1269 0.0 1
(C24683) Dictyostelium discoideum slug cDNA, clone SL-X091. 1269 0.0 2
(AU061437) Dictyostelium discoideum slug cDNA, clone SLE250. 1267 0.0 1
(C93094) Dictyostelium discoideum slug cDNA, clone SSF795. 1265 0.0 1
(C91936) Dictyostelium discoideum slug cDNA, clone SSC288. 1263 0.0 2
(AU051939) Dictyostelium discoideum slug cDNA, clone SSC436. 1261 0.0 1
(C94415) Dictyostelium discoideum slug cDNA, clone SSK773. 1261 0.0 1
(C94505) Dictyostelium discoideum slug cDNA, clone SSL113. 1257 0.0 2
dna update 2009. 7. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(O00909) RecName: Full=ADP-ribosylation factor 1; &AJ000063_1(A... 370 e-101
BT065309_1(BT065309|pid:none) Zea mays full-length cDNA clone ZM... 324 2e-87
(P36397) RecName: Full=ADP-ribosylation factor 1; Short... 323 4e-87
AF108891_1(AF108891|pid:none) Capsicum annuum ADP-ribosylation f... 322 8e-87
DQ191654_1(DQ191654|pid:none) Solanum tuberosum ARF-like small G... 322 1e-86
AC135465_4(AC135465|pid:none) Medicago truncatula clone mth2-24h... 321 1e-86
AF372902_1(AF372902|pid:none) Arabidopsis thaliana AT3g62290/T17... 321 2e-86
AK226308_1(AK226308|pid:none) Arabidopsis thaliana mRNA for simi... 321 2e-86
(Q06396) RecName: Full=ADP-ribosylation factor 1; AltName: Full=... 321 2e-86
AC009398_7(AC009398|pid:none) Genomic sequence for Arabidopsis t... 320 2e-86
protein update 2009. 7. 6
PSORT

psg: 0.97 gvh: 0.53 alm: 0.39 top: 0.73 tms: 0.00 mit: 0.23 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
20.0 %: mitochondrial
20.0 %: nuclear
8.0 %: extracellular, including cell wall
8.0 %: endoplasmic reticulum
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for SSC323 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSC323E
Full length Seq.
>SSC323E.Seq
GANANCAATNTNATCACCAACNANNNCAATAGGCTNATTATCCCCTCATAAATCTTAATA
TTTTCTCAACAATAATTTTTTTTAATTTGTACAATGGGTCTCGCTTTTGGTAAACTTTTC
AGCCGTTTCTTTGGCAAAAAAGATATGAGAATTTTAATGGTCGGTTTAGATGCTGCTGGT
AAAACCACCATTTTATACAAACTTAAATTAGGTGAAATTGTTACTACAATTCCAACCATT
GGTTTCAATGTCGAAACTGTCGAATTCAAAAACATTAACTTCACTGTATGGGATGTTGGT
GGTCAAGATAAAATTCGTCCATTATGGAGACATTATTTCCAAAATACTCAAGGTCTTATC
TTTGTTGTTGATTCAAACGATAGAGAAAGAATTCAAGAAGCTTGTGATGAACTCACTAAA
ATGCTCAATGAAGATGAATTACGTGATGCTGTTTTATTAGTTTTCTGTAACAAACAAGAT
CTTCCAAATGCCATGAGTGTCGCTGAAGTTACCGATAAATTAAATCTCCACTCTCTCCGT
TCAAGAAAATGGTACATACAGTCAACTTGTGCCACCAGTGGTGATGGTTTATATGAAGGT
TTAGACTGGCTCTCAAATACCTTAACAAGCTCCTCAAAATAAATGACGTAGGAGGTCAAT
TTAATAGAGTTTATTAGATTTTTTAATTATTTAATAATCTAATTAAACTACTGTTGTTTA
ATTTTGAAATAAAAAAAAAAAAAACCTTGTTTATATAAATAAAAA
Length of full length seq. 765