NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC317
Library SS
(Link to library)
Clone ID SSC317
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15332-1
Original site URL
Representative seq. ID SSC317P
(Link to Original site)
Representative DNA sequence 
>SSC317 (SSC317Q) /CSM/SS/SSC3-A/SSC317Q.Seq.d/
TGAAAATCATTTAAAGTCAATTGATCCAAGTAAACCAAGAGATTTAATGGATGATTTGTT
AATTGAATATGGATTAAATGAAATCACTAAAGAAGATACAATGCAAATCAATCAAATTTG
TTTTGATATTTTTGGACCAGCCGTTGGTACAGTTACAATCACAATGAATTGGGTAATTTT
ACAATTATGTAATCGTCCAGAACTTCAAGAGATTGCATATCAAGAAATTAAAAAAGCTGT
CAAAGATGATGAATATGTCAATTTGAATCATAAACAAAATGCCCCTTATATCGTTGCCTT
TATTAAAGAAACAATGAGACTTTGTTCAAATGGATTTGGTTTACCAAGAACTGCTAAAAA
TGATCAAATTTGTGGTGATTTTTTCATTCCAAAAGATGCTATTATTTTTATTAATTATTT
AGAAATTAGTCAAAATGAAGAAATCTTTAAAAATGCCAAAGAATTTAACCCAACTCGTTA
TTTAGATGAATCACTTCCTGTACCAAATATTCACTTTGGTGTTGGTCAAAGAGCATGTCC
TGGTCGTTTTGTCGXXXXXXXXXXAAAACCCCAAATGGTGGAAAAANTGGTGGATCCAAT
CNAATTTGGGGTTCCTTTAAAGCCAAAGGTTTTGGGATTAAAATTGGAAAGGGGAATTTG
GACCACCAATAATAATAATAAAAATTGTATTTAATGTTTTTATTTTTTAAAAAAAAAAAA
AAAAAA
sequence update 1998. 8.19
Translated Amino Acid sequence 
ENHLKSIDPSKPRDLMDDLLIEYGLNEITKEDTMQINQICFDIFGPAVGTVTITMNWVIL
QLCNRPELQEIAYQEIKKAVKDDEYVNLNHKQNAPYIVAFIKETMRLCSNGFGLPRTAKN
DQICGDFFIPKDAIIFINYLEISQNEEIFKNAKEFNPTRYLDESLPVPNIHFGVGQRACP
GRFV---

---KPQMVEKXVDPIXFGVPLKPKVLGLKLERGIWTTNNNNKNCI*cfyflkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
*ksfkvn*sk*tkrfng*fvn*iwik*nh*rrynanqsnlf*yfwtsrwysynhnelgnf
tim*ssrtsrdcisrn*kscqr**icqfes*tkcplyrcly*rnnetlfkwiwftknc*k
*snlw*ffhskrcyyfy*lfrn*sk*rnl*kcqri*pnslfr*itsctkyslwcwsksms
wsfc---

---ktpnggkxggsnxiwgsfkakgfgikigkgnldhq****klylmflffkkkkkk

Frame B:
ENHLKSIDPSKPRDLMDDLLIEYGLNEITKEDTMQINQICFDIFGPAVGTVTITMNWVIL
QLCNRPELQEIAYQEIKKAVKDDEYVNLNHKQNAPYIVAFIKETMRLCSNGFGLPRTAKN
DQICGDFFIPKDAIIFINYLEISQNEEIFKNAKEFNPTRYLDESLPVPNIHFGVGQRACP
GRFV---

---KPQMVEKXVDPIXFGVPLKPKVLGLKLERGIWTTNNNNKNCI*cfyflkkkkk

Frame C:
kii*sqliqvnqei*wmic*lnmd*mkslkkiqcksikfvlifldqplvqlqsq*ig*fy
nyvivqnfkrlhikklkklskmmnmsi*iinkmplislpllkkq*dfvqmdlvyqellkm
ikfvvifsfqkmllfllii*klvkmkkslkmpknltqlvi*mnhflyqiftlvlvkehvl
vvls---

---npkwwkxwwiqsnlgfl*sqrfwd*nwkgefgppiiiikivfnvfif*kkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC317 (SSC317Q) /CSM/SS/SSC3-A/SSC317Q.Seq.d/                       1332   0.0
AFF539 (AFF539Q) /CSM/AF/AFF5-B/AFF539Q.Seq.d/                       1098   0.0
SFF555 (SFF555Q) /CSM/SF/SFF5-C/SFF555Q.Seq.d/                       1094   0.0
SFA813 (SFA813Q) /CSM/SF/SFA8-A/SFA813Q.Seq.d/                       1066   0.0
SFF522 (SFF522Q) /CSM/SF/SFF5-A/SFF522Q.Seq.d/                       1049   0.0
SFD591 (SFD591Q) /CSM/SF/SFD5-D/SFD591Q.Seq.d/                       1041   0.0
SFG734 (SFG734Q) /CSM/SF/SFG7-B/SFG734Q.Seq.d/                       1039   0.0
SFF882 (SFF882Q) /CSM/SF/SFF8-D/SFF882Q.Seq.d/                       1039   0.0
CFI524 (CFI524Q) /CSM/CF/CFI5-A/CFI524Q.Seq.d/                       1033   0.0
CHA438 (CHA438Q) /CSM/CH/CHA4-B/CHA438Q.Seq.d/                       1019   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ398496) Dictyostelium discoideum cDNA clone:dds12m13, 3' ...  1092   0.0    1
(BJ398767) Dictyostelium discoideum cDNA clone:dds2j04, 3' e...  1029   0.0    2
(BJ398357) Dictyostelium discoideum cDNA clone:dds12k05, 3' ...  1047   0.0    1
(BJ400098) Dictyostelium discoideum cDNA clone:dds8e23, 3' e...  1039   0.0    1
(BJ400676) Dictyostelium discoideum cDNA clone:dds14d09, 3' ...  1037   0.0    2
(BJ398525) Dictyostelium discoideum cDNA clone:dds12d22, 3' ...  1037   0.0    1
(C84055) Dictyostelium discoideum slug cDNA, clone SSC561.        971   0.0    2
(BJ375299) Dictyostelium discoideum cDNA clone:ddc18o05, 3' ...  1031   0.0    1
(BJ377046) Dictyostelium discoideum cDNA clone:ddc22l10, 3' ...  1017   0.0    1
(BJ376938) Dictyostelium discoideum cDNA clone:ddc30n18, 3' ...   983   0.0    2
dna update 2009. 7. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QD0) RecName: Full=Probable cytochrome P450 517A4;          ...   381   e-104
(Q54CS3) RecName: Full=Probable cytochrome P450 508C1;          ...   144   3e-33
(Q556M5) RecName: Full=Probable cytochrome P450 508A1;          ...   132   8e-30
(Q1ZXA4) RecName: Full=Probable cytochrome P450 508D1;          ...   129   7e-29
(Q1ZXF5) RecName: Full=Probable cytochrome P450 508A4;          ...   127   3e-28
(Q54NY3) RecName: Full=Probable cytochrome P450 554A1;          ...   107   4e-22
AJ310693_1(AJ310693|pid:none) Platichthys flesus partial mRNA fo...   100   3e-20
(Q9YH64) RecName: Full=Cytochrome P450 1A1;          EC=1.14.14....   100   3e-20
S55318(S55318)cytochrome P450 1A, hepatic - Stenotomus chrysops       100   8e-20
(Q92116) RecName: Full=Cytochrome P450 1A1;          EC=1.14.14....   100   8e-20
protein update 2009. 6. 9
PSORT 

 psg: 0.43  gvh: 0.37  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSC317 is cyt
5' end seq. ID SSC317F
5' end seq. 
>SSC317F.Seq
TGAAAATCATTTAAAGTCAATTGATCCAAGTAAACCAAGAGATTTAATGGATGATTTGTT
AATTGAATATGGATTAAATGAAATCACTAAAGAAGATACAATGCAAATCAATCAAATTTG
TTTTGATATTTTTGGACCAGCCGTTGGTACAGTTACAATCACAATGAATTGGGTAATTTT
ACAATTATGTAATCGTCCAGAACTTCAAGAGATTGCATATCAAGAAATTAAAAAAGCTGT
CAAAGATGATGAATATGTCAATTTGAATCATAAACAAAATGCCCCTTATATCGTTGCCTT
TATTAAAGAAACAATGAGACTTTGTTCAAATGGATTTGGTTTACCAAGAACTGCTAAAAA
TGATCAAATTTGTGGTGATTTTTTCATTCCAAAAGATGCTATTATTTTTATTAATTATTT
AGAAATTAGTCAAAATGAAGAAATCTTTAAAAATGCCAAAGAATTTAACCCAACTCGTTA
TTTAGATGAATCACTTCCTGTACCAAATATTCACTTTGGTGTTGGTCAAAGAGCATGTCC
TGGTCGTTTTGTCG----------
Length of 5' end seq. 554
3' end seq. ID SSC317Z
3' end seq. 
>SSC317Z.Seq
----------AAAACCCCAAATGGTGGAAAAANTGGTGGATCCAATCNAATTTGGGGTTC
CTTTAAAGCCAAAGGTTTTGGGATTAAAATTGGAAAGGGGAATTTGGACCACCAATAATA
ATAATAAAAATTGTATTTAATGTTTTTATTTTTTAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 162
Connected seq. ID SSC317P
Connected seq. 
>SSC317P.Seq
TGAAAATCATTTAAAGTCAATTGATCCAAGTAAACCAAGAGATTTAATGGATGATTTGTT
AATTGAATATGGATTAAATGAAATCACTAAAGAAGATACAATGCAAATCAATCAAATTTG
TTTTGATATTTTTGGACCAGCCGTTGGTACAGTTACAATCACAATGAATTGGGTAATTTT
ACAATTATGTAATCGTCCAGAACTTCAAGAGATTGCATATCAAGAAATTAAAAAAGCTGT
CAAAGATGATGAATATGTCAATTTGAATCATAAACAAAATGCCCCTTATATCGTTGCCTT
TATTAAAGAAACAATGAGACTTTGTTCAAATGGATTTGGTTTACCAAGAACTGCTAAAAA
TGATCAAATTTGTGGTGATTTTTTCATTCCAAAAGATGCTATTATTTTTATTAATTATTT
AGAAATTAGTCAAAATGAAGAAATCTTTAAAAATGCCAAAGAATTTAACCCAACTCGTTA
TTTAGATGAATCACTTCCTGTACCAAATATTCACTTTGGTGTTGGTCAAAGAGCATGTCC
TGGTCGTTTTGTCG----------AAAACCCCAAATGGTGGAAAAANTGGTGGATCCAAT
CNAATTTGGGGTTCCTTTAAAGCCAAAGGTTTTGGGATTAAAATTGGAAAGGGGAATTTG
GACCACCAATAATAATAATAAAAATTGTATTTAATGTTTTTATTTTTTAAAAAAAAAAAA
AAAAAA
Length of connected seq. 716
Full length Seq ID -
Full length Seq. -
Length of full length seq. -