>SSC302 (SSC302Q) /CSM/SS/SSC3-A/SSC302Q.Seq.d/
XXXXXXXXXXCCCCCTTNCAATTTTTAAAAAGATTCANCCCTTATNCATTNATTTATTTA
AATTTTTTNAAAAATGAAATTTATAAATGTNGATTAATAATTATGGAATTTGGAACAATA
AATTATTTATTGTTCTGGGAGACTTTGGTATTTAGTAACGTACTCCTGAAGTTCACACTT
GGTTACGAATCTGTCATTATCTTTATCCAATTCACTAAAGAAATTTTCAACAATCATAAG
TGGAGCAATTGCATCTGGATTGTTTTTATTTACCCAATTGCATACTTCATCCCATGAGAT
CCTTCCATCCTTATCAGTGTCATAGCCTTTCAAGAAGTTGTTACAGATGTTGTTAATTGC
CTTTTGCAATTTCTTTGCAGCAACATCAGCCTTATGGCCATGAATCTCTTTTATTGAAAT
AATTCCATCCTTATCCTTATCAAGAGAAATAAACATTGAAGAGGCAGCACGTAATGGATC
TTTTGAACCGGTTTCCTTCAAACGTTTTACAGCTTCATCAAATGTAATATTACCATCACC
ATTTGAATCAAATTTTCTTAACATATCCTCTACATCTTTTGTAATTGCACAATCCATTTT
TTAATTTTAATATTTTCTAACAATTTCTAGTTCTAGATCGCGAGCGGCCG

---PXQFLKRFXPYXXIYLNFXKNEIYKCXLIIMEFGTINYLLFWETLVFSNVLLKFTLG
YESVIIFIQFTKEIFNNHKWSNCIWIVFIYPIAYFIP*dpsilisviafqevvtdvvncl
lqflcsnislmamnlfy*nnsililikrnkh*rgst*wif*tgflqtfysfikcnititi
*ikfs*hilyifcnctihflilifsnnf*f*iasg

Frame A:
---plxifkkixplxixlfkffxk*nl*mxinnygiwnnklfivlgdfgi**rtpevhtw
lrichylypih*rnfqqs*veqlhldcfylpncilhpmrsfhpyqchslsrscyrcc*lp
faislqqhqpygheslllk*fhpypyqek*tlkrqhvmdllnrfpsnvlqlhqm*yyhhh
lnqifltyplhll*lhnpffnfnif*qflvldrerp


Frame B:
---PXQFLKRFXPYXXIYLNFXKNEIYKCXLIIMEFGTINYLLFWETLVFSNVLLKFTLG
YESVIIFIQFTKEIFNNHKWSNCIWIVFIYPIAYFIP*dpsilisviafqevvtdvvncl
lqflcsnislmamnlfy*nnsililikrnkh*rgst*wif*tgflqtfysfikcnititi
*ikfs*hilyifcnctihflilifsnnf*f*iasg


Frame C:
---pxnf*kdsxlxhxfi*ifxkmkfinvd**lwnleq*iiycsgrlwylvtys*sshlv
tnlslslsnslkkfstiisgaiasglflftqlhtssheilpslsvs*pfkkllqmlliaf
cnffaatsalwp*isfieiipslslsreinieeaarngsfepvsfkrftassnvilpspf
esnflnisstsfviaqsif*f*yfltisssrsraa

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC302 (SSC302Q) /CSM/SS/SSC3-A/SSC302Q.Seq.d/                       1233   0.0
SSM408 (SSM408Q) /CSM/SS/SSM4-A/SSM408Q.Seq.d/                       1090   0.0
SSM294 (SSM294Q) /CSM/SS/SSM2-D/SSM294Q.Seq.d/                       1090   0.0
SSL187 (SSL187Q) /CSM/SS/SSL1-D/SSL187Q.Seq.d/                       1090   0.0
SSK729 (SSK729Q) /CSM/SS/SSK7-B/SSK729Q.Seq.d/                       1090   0.0
SSH153 (SSH153Q) /CSM/SS/SSH1-C/SSH153Q.Seq.d/                       1090   0.0
SSG624 (SSG624Q) /CSM/SS/SSG6-A/SSG624Q.Seq.d/                       1090   0.0
SSF848 (SSF848Q) /CSM/SS/SSF8-B/SSF848Q.Seq.d/                       1090   0.0
SSF426 (SSF426Q) /CSM/SS/SSF4-B/SSF426Q.Seq.d/                       1090   0.0
SSE745 (SSE745Q) /CSM/SS/SSE7-B/SSE745Q.Seq.d/                       1090   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X82784|X82784.1 D.discoideum mRNA for calcium binding protein.   977  0.0  2
AC116987|AC116987.2 Dictyostelium discoideum chromosome 2 map 3527441-3568052 strain AX4, complete sequence.   900  0.0  3
BQ602972|BQ602972.1 MI-P-NA-aes-f-10-1-UM.s1 MI-P-NA Sus scrofa cDNA clone MI-P-NA-aes-f-10-1-UM 3', mRNA sequence.    48  5e-04  2
BI438824|BI438824.1 ic27b07.x3 HR85 islet Homo sapiens cDNA 3' similar to TR:Q9Y287 Q9Y287 TRANSMEMBRANE PROTEIN BRI. ;, mRNA sequence.    48  6e-04  2
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    38  0.006  8
AI584278|AI584278.1 fb83d12.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA 3', mRNA sequence.    52  0.009  1
AW074573|AW074573.1 xb98c01.x1 NCI_CGAP_Co21 Homo sapiens cDNA clone IMAGE:2582784 3', mRNA sequence.    52  0.009  1
CB477116|CB477116.1 jns16bB05.f jns Sus scrofa cDNA 5', mRNA sequence.    52  0.009  1
AL135055|AL135055.1 Homo sapiens mRNA; EST DKFZp762N0611_r1  (from clone DKFZp762N0611).    52  0.009  1
BF703818|BF703818.1 MI-P-O2-abs-c-02-1-UM.s1 MI-P-O2 Sus scrofa cDNA clone MI-P-O2-abs-c-02-1-UM 3', mRNA sequence.    52  0.009  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54653) RecName: Full=Calcium-binding protein 2;  &S62881(S6288...    78   2e-13
(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=...    69   9e-11
(Q869S9) RecName: Full=Calcium-binding protein E; AltName: Full=...    69   1e-10
AB070447_1(AB070447|pid:none) Dictyostelium discoideum cbpE mRNA...    69   1e-10
AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ...    68   3e-10
(Q54RF4) RecName: Full=Calcium-binding protein 4a;                     68   3e-10
(P09485) RecName: Full=Calcium-binding protein LPS1-alpha;             58   3e-07
CR940353_624(CR940353|pid:none) Theileria annulata strain Ankara...    56   1e-06
EF523472_1(EF523472|pid:none) Synthetic construct putative aller...    55   2e-06
(O64943) RecName: Full=Polcalcin Jun o 2; AltName: Full=Calcium-...    55   2e-06

 psg: 0.81  gvh: 0.61  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: mitochondrial
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSC302 is nuc

>SSC302Z.Seq
----------CCCCCTTNCAATTTTTAAAAAGATTCANCCCTTATNCATTNATTTATTTA
AATTTTTTNAAAAATGAAATTTATAAATGTNGATTAATAATTATGGAATTTGGAACAATA
AATTATTTATTGTTCTGGGAGACTTTGGTATTTAGTAACGTACTCCTGAAGTTCACACTT
GGTTACGAATCTGTCATTATCTTTATCCAATTCACTAAAGAAATTTTCAACAATCATAAG
TGGAGCAATTGCATCTGGATTGTTTTTATTTACCCAATTGCATACTTCATCCCATGAGAT
CCTTCCATCCTTATCAGTGTCATAGCCTTTCAAGAAGTTGTTACAGATGTTGTTAATTGC
CTTTTGCAATTTCTTTGCAGCAACATCAGCCTTATGGCCATGAATCTCTTTTATTGAAAT
AATTCCATCCTTATCCTTATCAAGAGAAATAAACATTGAAGAGGCAGCACGTAATGGATC
TTTTGAACCGGTTTCCTTCAAACGTTTTACAGCTTCATCAAATGTAATATTACCATCACC
ATTTGAATCAAATTTTCTTAACATATCCTCTACATCTTTTGTAATTGCACAATCCATTTT
TTAATTTTAATATTTTCTAACAATTTCTAGTTCTAGATCGCGAGCGGCCG