SSC290
Library SS
(Link to library)
Clone ID SSC290
Atlas ID
NBRP ID
dictyBase ID
Link to Contig Contig-U09317-1
Original site URL
Representative seq. ID SSC290P
(Link to Original site)
Representative DNA sequence
>SSC290 (SSC290Q) /CSM/SS/SSC2-D/SSC290Q.Seq.d/
GAAAATTGTGTACCATGTGTTGAAGGCAATAAATGTTCAGAATCCAGTGATAAATGTCAA
CAATTGGAATGTAATCCATACAATAGTACAACGGAATGTATTGATCGTACTAAAAAGAAT
TGTGATGATTCAAATGCTTGTACTATTGATACTTGTAATGGTGAAAGTGGTGAATGTGAA
AATACTCCAAAACAATGTCTTGCTAAAAATAAATGCTCCACTGCACGTTGTAACTCTAAA
ACAGGCCAATGTGATAATATCTATCATTGTGATGATGGTATACTTTGTACTCTCGATAAA
TGTTCAGAAAATGGTACTTGCTATTATGAAGCAAATCCATGTGATGATGGTGATCAATGT
ACAATTGACATTTGTTTGAATACTCTAACTGAAACTGGTGGTTGCTCTCACAGTGCCCGT
GTTTGTGAACCAAAAAATTCATGTTTTACAAGTCATTGTGATAAXXXXXXXXXXTTAATC
CAAACCCCAATCGGGGAGAAAATCCCCTTTGGGCTGCTAATAATTCTTGNTAAGGGAAAA
AAAAAAAAAAAAAAAAAAAAAAAATATTATTTGTTTTTTTTTTTAAAAANAAAATCATTT
CATTTTAAAGATATATATATTTATGTAAAAAAATAAAAAAATAAAAATAATAAAAAAATA
AAAAAAAA
sequence update 1998. 8. 5
Translated Amino Acid sequence
ENCVPCVEGNKCSESSDKCQQLECNPYNSTTECIDRTKKNCDDSNACTIDTCNGESGECE
NTPKQCLAKNKCSTARCNSKTGQCDNIYHCDDGILCTLDKCSENGTCYYEANPCDDGDQC
TIDICLNTLTETGGCSHSARVCEPKNSCFTSHCD---

---LIQTPIGEKIPFGLLIILXKGKKKKKKKKKYYLFFFLKXKSFHFKDIYIYVKK*knk
nnkkikk


Translated Amino Acid sequence (All Frames)
Frame A:
ENCVPCVEGNKCSESSDKCQQLECNPYNSTTECIDRTKKNCDDSNACTIDTCNGESGECE
NTPKQCLAKNKCSTARCNSKTGQCDNIYHCDDGILCTLDKCSENGTCYYEANPCDDGDQC
TIDICLNTLTETGGCSHSARVCEPKNSCFTSHCD---

---LIQTPIGEKIPFGLLIILXKGKKKKKKKKKYYLFFFLKXKSFHFKDIYIYVKK*knk
nnkkikk

Frame B:
kivyhvlkainvqnpvinvnnwnvihtivqrnvlivlkrivmiqmlvllilvmvkvvnvk
ilqnnvllkinaplhvvtlkqanviisiivmmvyfvlsinvqkmvlaimkqihvmmvinv
qltfv*il*lklvvaltvpvfvnqkihvlqvivi---

---*skpqsgrksplgc**flxrekkkkkkkkniicfff*kxnhfilkiyifm*knkkik
iikk*kk

Frame C:
klctmc*rq*mfriq**mstigm*siq*yngmy*sy*kel**fkclyy*yl*w*kw*m*k
ysktmsc*k*mlhctl*l*nrpm**ylsl**wytlysr*mfrkwylll*sksm**w*smy
n*hlfeysn*nwwllsqcpcl*tkkfmfyksl**---

---npnpnrgenplwaannsx*gkkkkkkkkkilfvfffkxkiisf*ryiylckkikk*k
**knkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSC290 (SSC290Q) /CSM/SS/SSC2-D/SSC290Q.Seq.d/ 997 0.0
SHH704 (SHH704Q) /CSM/SH/SHH7-A/SHH704Q.Seq.d/ 46 7e-04
SHG183 (SHG183Q) /CSM/SH/SHG1-D/SHG183Q.Seq.d/ 46 7e-04
SHD535 (SHD535Q) /CSM/SH/SHD5-B/SHD535Q.Seq.d/ 46 7e-04
SHA693 (SHA693Q) /CSM/SH/SHA6-D/SHA693Q.Seq.d/ 46 7e-04
CHR889 (CHR889Q) /CSM/CH/CHR8-D/CHR889Q.Seq.d/ 46 7e-04
CHR682 (CHR682Q) /CSM/CH/CHR6-D/CHR682Q.Seq.d/ 46 7e-04
CHP164 (CHP164Q) /CSM/CH/CHP1-C/CHP164Q.Seq.d/ 46 7e-04
CHO508 (CHO508Q) /CSM/CH/CHO5-A/CHO508Q.Seq.d/ 46 7e-04
CHO131 (CHO131Q) /CSM/CH/CHO1-B/CHO131Q.Seq.d/ 46 7e-04

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X78948|X78948.1 D.minutum ecmB gene. 46 0.031 3
AC095075|AC095075.6 Rattus norvegicus clone CH230-7B4, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 40 0.15 3
AC109368|AC109368.9 Rattus norvegicus clone CH230-6E17, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 50 0.15 2
AC018951|AC018951.8 Homo sapiens chromosome 11, clone RP11-307P14, complete sequence. 46 0.55 1
BZ860438|BZ860438.1 CH240_269K16.TV CHORI-240 Bos taurus genomic clone CH240_269K16, DNA sequence. 46 0.55 1
BI349626|BI349626.1 dae61d09.y3 Blackshear/Soares normalized Xenopus egg library Xenopus laevis cDNA clone IMAGE:4678696 5', mRNA sequence. 44 2.2 1
AC096114|AC096114.7 Rattus norvegicus clone CH230-10J6, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 44 2.2 1
AC079549|AC079549.1 Mus musculus clone RP23-421E13, WORKING DRAFT SEQUENCE, 36 unordered pieces. 44 2.2 1
AC119091|AC119091.3 Rattus norvegicus clone CH230-287F12, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 44 2.2 1
BX537105|BX537105.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-3L24. 32 4.2 6
dna update 2003. 7.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 359 3e-98
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 133 4e-30
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 119 6e-26
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 115 1e-24
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 110 5e-23
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 108 1e-22
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 103 6e-21
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 92 2e-17
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor; &AC11568... 85 2e-15
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 76 8e-13
protein update 2009. 6. 9
PSORT

psg: 0.75 gvh: 0.32 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.09 mip: 0.00
nuc: 0.24 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
28.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for SSC290 is nuc

5' end seq. ID SSC290F
5' end seq.
>SSC290F.Seq
GAAAATTGTGTACCATGTGTTGAAGGCAATAAATGTTCAGAATCCAGTGATAAATGTCAA
CAATTGGAATGTAATCCATACAATAGTACAACGGAATGTATTGATCGTACTAAAAAGAAT
TGTGATGATTCAAATGCTTGTACTATTGATACTTGTAATGGTGAAAGTGGTGAATGTGAA
AATACTCCAAAACAATGTCTTGCTAAAAATAAATGCTCCACTGCACGTTGTAACTCTAAA
ACAGGCCAATGTGATAATATCTATCATTGTGATGATGGTATACTTTGTACTCTCGATAAA
TGTTCAGAAAATGGTACTTGCTATTATGAAGCAAATCCATGTGATGATGGTGATCAATGT
ACAATTGACATTTGTTTGAATACTCTAACTGAAACTGGTGGTTGCTCTCACAGTGCCCGT
GTTTGTGAACCAAAAAATTCATGTTTTACAAGTCATTGTGATAA----------
Length of 5' end seq. 464
3' end seq. ID SSC290Z
3' end seq.
>SSC290Z.Seq
----------TTAATCCAAACCCCAATCGGGGAGAAAATCCCCTTTGGGCTGCTAATAAT
TCTTGNTAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAATATTATTTGTTTTTTTTTTT
AAAAANAAAATCATTTCATTTTAAAGATATATATATTTATGTAAAAAAATAAAAAAATAA
AAATAATAAAAAAATAAAAAAAAA
Length of 3' end seq. 194
Connected seq. ID SSC290P
Connected seq.
>SSC290P.Seq
GAAAATTGTGTACCATGTGTTGAAGGCAATAAATGTTCAGAATCCAGTGATAAATGTCAA
CAATTGGAATGTAATCCATACAATAGTACAACGGAATGTATTGATCGTACTAAAAAGAAT
TGTGATGATTCAAATGCTTGTACTATTGATACTTGTAATGGTGAAAGTGGTGAATGTGAA
AATACTCCAAAACAATGTCTTGCTAAAAATAAATGCTCCACTGCACGTTGTAACTCTAAA
ACAGGCCAATGTGATAATATCTATCATTGTGATGATGGTATACTTTGTACTCTCGATAAA
TGTTCAGAAAATGGTACTTGCTATTATGAAGCAAATCCATGTGATGATGGTGATCAATGT
ACAATTGACATTTGTTTGAATACTCTAACTGAAACTGGTGGTTGCTCTCACAGTGCCCGT
GTTTGTGAACCAAAAAATTCATGTTTTACAAGTCATTGTGATAA----------TTAATC
CAAACCCCAATCGGGGAGAAAATCCCCTTTGGGCTGCTAATAATTCTTGNTAAGGGAAAA
AAAAAAAAAAAAAAAAAAAAAAAATATTATTTGTTTTTTTTTTTAAAAANAAAATCATTT
CATTTTAAAGATATATATATTTATGTAAAAAAATAAAAAAATAAAAATAATAAAAAAATA
AAAAAAAA
Length of connected seq. 658
Full length Seq ID -
Full length Seq. -
Length of full length seq. -