>SSC273 (SSC273Q) /CSM/SS/SSC2-D/SSC273Q.Seq.d/
GTTTCGAATTAATTTCAAGAGCATATCTTATGATGGTTGGTTCAACTTGTTCAGAACAAA
GAAGAGGATTTTTATGTTGTTTTGTATATTCAATGAGTATTTGGTGGAAATTAATGATGA
TTTTAGGTGTTGTTTCATCTATTGTATTATGTGGTTTGACAGCATTAGTGATTGCATTAG
AAGGATTTGCAAAAATAAAGATTATTCGTTTAGCAGTTACAGATGCAGTAACATTGGTTC
AATTATTCTTTAGTGTAATATGTTTTGTAACATCAAGAGCCACCCAAAAAATGCAAGATG
AAGAAGAGGAAGCACTTCATGGTGTTAAAAAACAAGAACTCCAACCAACTAATTCTGCTG
CATCAACTCCATCTTCTGCTCCACCATGTTATATTGTTGATGAGAAAAAAGATTCTGCTT
CTCCATCTGGTCAATCTAAAGATTCTGAACCTTCAGCAGTTTTACCAGCTTAAATATTTT
TAAAAAATTTTTAAAAATAATAXXXXXXXXXX

FELISRAYLMMVGSTCSEQRRGFLCCFVYSMSIWWKLMMILGVVSSIVLCGLTALVIALE
GFAKIKIIRLAVTDAVTLVQLFFSVICFVTSRATQKMQDEEEEALHGVKKQELQPTNSAA
STPSSAPPCYIVDEKKDSASPSGQSKDSEPSAVLPA*iflknf*k*---

Frame A:
vsn*fqehil*wlvqlvqnkeedfyvvlyiq*vfggn***f*vlfhllyyvv*qh**lh*
kdlqk*rlfv*qlqmq*hwfnyslv*yvl*hqeppkkckmkkrkhfmvlknknsnqlill
hqlhlllhhvillmrkkilllhlvnlkilnlqqfyqlkyf*kifknn---


Frame B:
frinfksisydgwfnlfrtkkrifmlfcifneylveinddfrccfiycimwfdsisdcir
ricknkdysfssyrcsnigsiil*cnmfcnikshpknar*rrgstswc*ktrtptn*fcc
insifcstmlyc**ekrfcfsiwsi*rf*tfssftslnifkkflki---


Frame C:
FELISRAYLMMVGSTCSEQRRGFLCCFVYSMSIWWKLMMILGVVSSIVLCGLTALVIALE
GFAKIKIIRLAVTDAVTLVQLFFSVICFVTSRATQKMQDEEEEALHGVKKQELQPTNSAA
STPSSAPPCYIVDEKKDSASPSGQSKDSEPSAVLPA*iflknf*k*---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC273 (SSC273Q) /CSM/SS/SSC2-D/SSC273Q.Seq.d/                        944   0.0
SSM275 (SSM275Q) /CSM/SS/SSM2-D/SSM275Q.Seq.d/                        936   0.0
SSL143 (SSL143Q) /CSM/SS/SSL1-B/SSL143Q.Seq.d/                        936   0.0
SSI872 (SSI872Q) /CSM/SS/SSI8-C/SSI872Q.Seq.d/                        936   0.0
SSF570 (SSF570Q) /CSM/SS/SSF5-C/SSF570Q.Seq.d/                        936   0.0
SSA351 (SSA351Q) /CSM/SS/SSA3-C/SSA351Q.Seq.d/                        936   0.0
SSM532 (SSM532Q) /CSM/SS/SSM5-B/SSM532Q.Seq.d/                        928   0.0
SSI669 (SSI669Q) /CSM/SS/SSI6-C/SSI669Q.Seq.d/                        924   0.0
SSI720 (SSI720Q) /CSM/SS/SSI7-A/SSI720Q.Seq.d/                        922   0.0
SSJ488 (SSJ488Q) /CSM/SS/SSJ4-D/SSJ488Q.Seq.d/                        848   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL158164|AL158164.15 Human DNA sequence from clone RP11-414K1 on chromosome 10.    48  0.11  1
AC027366|AC027366.1 Homo sapiens clone RP11-27F17, LOW-PASS SEQUENCE SAMPLING.    48  0.43  2
AC131757|AC131757.2 Mus musculus chromosome UNK clone RP24-210I7, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38  0.88  2
BX322665|BX322665.4 Zebrafish DNA sequence from clone DKEY-183N20 in linkage group 20.    44  0.95  2
AC140313|AC140313.1 Mus musculus chromosome UNK clone RP24-324C6, WORKING DRAFT SEQUENCE, 7 unordered pieces.    34  0.96  5
AC090012|AC090012.8 Homo sapiens 12q BAC RP11-6F20 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    38  1.3  3
BF273477|BF273477.1 GA__Eb0018C05f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0018C05f, mRNA sequence.    44  1.6  1
AC131469|AC131469.5 Rattus norvegicus clone CH230-193C19, WORKING DRAFT SEQUENCE, 1 ordered piece.    44  1.6  1
AC018583|AC018583.3 Homo sapiens clone RP11-6F20, WORKING DRAFT SEQUENCE, 10 unordered pieces.    38  1.6  4
AL049180|AL049180.3 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P1.    38  1.9  6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU276418_1(EU276418|pid:none) Olive flounder iridovirus strain O...    36   0.47
AB043979_1(AB043979|pid:none) African lampeye iridovirus gene fo...    35   1.0
AY608684_1(AY608684|pid:none) Turbot reddish body iridovirus ade...    35   1.0
AB007367_1(AB007367|pid:none) Red sea bream iridovirus gene for ...    35   1.0
AF371960_123(AF371960|pid:none) Infectious spleen and kidney nec...    35   1.0
AL844507_87(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    35   1.4
AM910986_87(AM910986|pid:none) Plasmodium knowlesi strain H chro...    32   6.7
AB243402_1(AB243402|pid:none) Aspergillus oryzae AouapC gene for...    32   6.7

 psg: 0.93  gvh: 0.74  alm: 0.28  top: 0.53  tms: 0.07  mit: 0.31  mip: 0.15
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for SSC273 is pla

>SSC273F.Seq
GTTTCGAATTAATTTCAAGAGCATATCTTATGATGGTTGGTTCAACTTGTTCAGAACAAA
GAAGAGGATTTTTATGTTGTTTTGTATATTCAATGAGTATTTGGTGGAAATTAATGATGA
TTTTAGGTGTTGTTTCATCTATTGTATTATGTGGTTTGACAGCATTAGTGATTGCATTAG
AAGGATTTGCAAAAATAAAGATTATTCGTTTAGCAGTTACAGATGCAGTAACATTGGTTC
AATTATTCTTTAGTGTAATATGTTTTGTAACATCAAGAGCCACCCAAAAAATGCAAGATG
AAGAAGAGGAAGCACTTCATGGTGTTAAAAAACAAGAACTCCAACCAACTAATTCTGCTG
CATCAACTCCATCTTCTGCTCCACCATGTTATATTGTTGATGAGAAAAAAGATTCTGCTT
CTCCATCTGGTCAATCTAAAGATTCTGAACCTTCAGCAGTTTTACCAGCTTAAATATTTT
TAAAAAATTTTTAAAAATAATA----------