>SSC271 (SSC271Q) /CSM/SS/SSC2-C/SSC271Q.Seq.d/
XXXXXXXXXXCAATTAATGGTACCCAATTAAATCNATATATCGAATGGATGCCACAATAT
AATATTTCAAATCCAGTATACCAAACCTGGGACGTCTGGAACNATTATGGTCNAGATTTG
TTTGTTCCATCAACAACATGTGATGATTTCACTCAACAATCAATCGAACATTTAGGTAGT
ATTGGTATTAATTATAATTGTTCAACAGTTTTCAAGAGAGATTACATTAATCTTTTCACT
GAAAAACCACAACCAATCGATTTCACAGAACATTATGATGATATCTTTAAATTCTATGAA
GCTGTATTAGAAATTNAAGAAGGCTCAATTGCACAAATCATTGAAAGAATTTTATCAATC
ATTGGTTTAAAGAAATATATTTACGTTCAAGGTGAATATTATTTATTAGAATTAAATTAT
CCATTTATGAATGCAAAATATGNTTATATCACATTACCAGGATGTCCCGCAAATGGTATC
GATTATGAAAATGGCAATTTTATTCATCTCAATTAGATTATTTTAAAATTAGATTATTTT
AAATTAAATTGGTTATAAATAAAAACTAAAAACAAAAATAATAAAAAAAAAATATCTTTT
TTTTTTTTAATATTTTTCAAACTGTNTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAA

---INGTQLNXYIEWMPQYNISNPVYQTWDVWNXYGXDLFVPSTTCDDFTQQSIEHLGSI
GINYNCSTVFKRDYINLFTEKPQPIDFTEHYDDIFKFYEAVLEIXEGSIAQIIERILSII
GLKKYIYVQGEYYLLELNYPFMNAKYXYITLPGCPANGIDYENGNFIHLN*iilkldyfk
lnwl*iktknknnkkkisfffliffklxlkkkkkkkkk

Frame A:
---n*wypiksiyrmdati*yfkssipnlgrlexlwsrfvcsinnm**fhstinrtfr*y
wy*l*lfnsfqerlh*sfh*ktttnrfhrtl**yl*il*scirnxrrlnctnh*knfinh
wfkeiylrsr*ilfiriklsiyeckixlyhitrmsrkwyrl*kwqfyssqldyfkirlf*
iklvinkn*kqk**kkniffffnifqtvsekkkkkkkk


Frame B:
---INGTQLNXYIEWMPQYNISNPVYQTWDVWNXYGXDLFVPSTTCDDFTQQSIEHLGSI
GINYNCSTVFKRDYINLFTEKPQPIDFTEHYDDIFKFYEAVLEIXEGSIAQIIERILSII
GLKKYIYVQGEYYLLELNYPFMNAKYXYITLPGCPANGIDYENGNFIHLN*iilkldyfk
lnwl*iktknknnkkkisfffliffklxlkkkkkkkkk


Frame C:
---lmvpn*ixisngchniifqiqytkpgtsgtimvxiclfhqqhvmislnnqsni*vvl
vliiivqqfsreitlifslknhnqsisqnimmislnsmkly*kxkkaqlhkslkefyqsl
v*rniftfkvniiy*n*iihl*mqnmxishyqdvpqmvsimkmailfisirlf*n*iiln
*igyk*klktkiikkkylfff*yfsncx*kkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC271 (SSC271Q) /CSM/SS/SSC2-C/SSC271Q.Seq.d/                        965   0.0
SSK458 (SSK458Q) /CSM/SS/SSK4-C/SSK458Q.Seq.d/                        926   0.0
FC-AD10 (FC-AD10Q) /CSM/FC/FC-AD/FC-AD10Q.Seq.d/                      910   0.0
FC-080 (FC-080Q) /CSM/CG/CG-FC/FC-080Q.Seq.d/                         910   0.0
FC-AG17 (FC-AG17Q) /CSM/FC/FC-AG/FC-AG17Q.Seq.d/                      902   0.0
SFJ661 (SFJ661Q) /CSM/SF/SFJ6-C/SFJ661Q.Seq.d/                        805   0.0
VFG895 (VFG895Q) /CSM/VF/VFG8-D/VFG895Q.Seq.d/                        646   0.0
SLE504 (SLE504Q) /CSM/SL/SLE5-A/SLE504Q.Seq.d/                        630   e-180
VFC480 (VFC480Q) /CSM/VF/VFC4-D/VFC480Q.Seq.d/                        613   e-174
VHL857 (VHL857Q) /CSM/VH/VHL8-C/VHL857Q.Seq.d/                        605   e-172

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   571  0.0  5
AP000459|AP000459.4 Homo sapiens genomic DNA, chromosome 21q, clone:RP11-42M17.    48  0.091  3
AC108909|AC108909.6 Mus musculus clone RP24-245I16, WORKING DRAFT SEQUENCE, 8 ordered pieces.    46  0.13  2
AL132638|AL132638.4 Homo sapiens chromosome 21 RPCIP704L1320.+++SEQUENCING IN  PROGRESS+++.    48  0.14  1
AQ474400|AQ474400.1 CITBI-E1-2588G23.TF CITBI-E1 Homo sapiens genomic clone 2588G23, genomic survey sequence.    48  0.14  1
AL133222|AL133222.2 Homo sapiens chromosome 21 BAC RPCIP704P1769.    48  0.14  1
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    32  0.28  9
BZ961705|BZ961705.1 PUFII70TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa350K19, DNA sequence.    46  0.54  1
BZ961703|BZ961703.1 PUFII70TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa350K19, DNA sequence.    46  0.54  1
BZ372458|BZ372458.1 ie67g03.b1 WGS-ZmaysF (DH5a methyl filtered) Zea mays genomic clone ie67g03 5', DNA sequence.    46  0.54  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q553W9) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5 ...   342   6e-93
(Q86JG6) RecName: Full=Cln5-like protein 1; Flags: Precursor;  &...    65   2e-09
(Q54WC3) RecName: Full=Cln5-like protein 2; Flags: Precursor;          50   6e-05
(Q1ZYR0) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    45   0.001
AC116305_28(AC116305|pid:none) Dictyostelium discoideum chromoso...    45   0.002
CR761663_1(CR761663|pid:none) Xenopus tropicalis finished cDNA, ...    44   0.003
AY885123_1(AY885123|pid:none) Canis familiaris CLN5 (CLN5) gene,...    42   0.021
(Q5JZQ9) Ceroid-lipofuscinosis neuronal protein 5 precursor (Pro...    42   0.021
(A2TJ54) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    39   0.13
AK032293_1(AK032293|pid:none) Mus musculus adult male olfactory ...    39   0.17

 psg: 0.75  gvh: 0.46  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSC271 is cyt

>SSC271Z.Seq
----------CAATTAATGGTACCCAATTAAATCNATATATCGAATGGATGCCACAATAT
AATATTTCAAATCCAGTATACCAAACCTGGGACGTCTGGAACNATTATGGTCNAGATTTG
TTTGTTCCATCAACAACATGTGATGATTTCACTCAACAATCAATCGAACATTTAGGTAGT
ATTGGTATTAATTATAATTGTTCAACAGTTTTCAAGAGAGATTACATTAATCTTTTCACT
GAAAAACCACAACCAATCGATTTCACAGAACATTATGATGATATCTTTAAATTCTATGAA
GCTGTATTAGAAATTNAAGAAGGCTCAATTGCACAAATCATTGAAAGAATTTTATCAATC
ATTGGTTTAAAGAAATATATTTACGTTCAAGGTGAATATTATTTATTAGAATTAAATTAT
CCATTTATGAATGCAAAATATGNTTATATCACATTACCAGGATGTCCCGCAAATGGTATC
GATTATGAAAATGGCAATTTTATTCATCTCAATTAGATTATTTTAAAATTAGATTATTTT
AAATTAAATTGGTTATAAATAAAAACTAAAAACAAAAATAATAAAAAAAAAATATCTTTT
TTTTTTTTAATATTTTTCAAACTGTNTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAA