>SSC270 (SSC270Q) /CSM/SS/SSC2-C/SSC270Q.Seq.d/
XXXXXXXXXXAAAAAAAAAATAAAAAAAGAAAAAATAATGTATCAAACACACACAACATT
CAATAACTCNATCATTTGATAACCCAAATGTACAACCCCAAAAAAAAAAAAATCAAAAAA
TCAAAAAAATTTTATTTTTCCATTAAATATATTTAGAAATAATATAAAATCTATTTCCAA
AAAATAAAAATAAAAANNAAAATGATGGTGATATTTAAAAATAGAAATAAAAAAAATATA
TAAAAAAAAAATTTATAAAAAAA

---kkk*kkkk*CIKHTQHSITXSFDNPNVQPQKKKNQKIKKILFFH*iyleii*nlfpk
nknkxxndgdi*k*k*kkyikkkfikk

Frame A:
---kkk*kkkk*CIKHTQHSITXSFDNPNVQPQKKKNQKIKKILFFH*iyleii*nlfpk
nknkxxndgdi*k*k*kkyikkkfikk


Frame B:
---kknkkrknnvsnthniq*lxhlitqmynpkkkkikkskkfyfsikyi*k*ykiyfqk
ikikxkmmvifknrnkkni*kknl*k


Frame C:
---kkikkekimyqthttfnnsii**pkcttpkkkksknqknfifplnifrnniksiskk
*k*kxk*w*ylkieikkiykkkiykk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC270 (SSC270Q) /CSM/SS/SSC2-C/SSC270Q.Seq.d/                        121   5e-27
SSL440 (SSL440Q) /CSM/SS/SSL4-B/SSL440Q.Seq.d/                        107   8e-23
SSK831 (SSK831Q) /CSM/SS/SSK8-B/SSK831Q.Seq.d/                        107   8e-23
SLC526 (SLC526Q) /CSM/SL/SLC5-B/SLC526Q.Seq.d/                         34   0.99
SHF187 (SHF187Q) /CSM/SH/SHF1-D/SHF187Q.Seq.d/                         34   0.99
VHC202 (VHC202Q) /CSM/VH/VHC2-A/VHC202Q.Seq.d/                         32   3.9

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC004055|AC004055.1 Homo sapiens chromosome 4 clone B221D23 map 4q25, complete sequence.    40     13  1
AC073772|AC073772.1 Mus musculus clone RP23-367C13, WORKING DRAFT SEQUENCE, 39 unordered pieces.    40     13  1
BM114075|BM114075.1 EST561611 potato roots Solanum tuberosum cDNA clone cPRO20G24 5' end, mRNA sequence.    40     13  1
AL355811|AL355811.4 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-562A11.    40     13  1
BQ514538|BQ514538.1 EST621953 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMIM49 3' end, mRNA sequence.    40     13  1
BM112514|BM112514.1 EST560050 potato roots Solanum tuberosum cDNA clone cPRO14F15 5' end, mRNA sequence.    40     13  1
BQ514537|BQ514537.1 EST621952 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMIM49 5' end, mRNA sequence.    40     13  1
BM111872|BM111872.1 EST559408 potato roots Solanum tuberosum cDNA clone cPRO12L13 5' end, mRNA sequence.    40     13  1
AC102394|AC102394.2 Mus musculus clone RP24-161F14, WORKING DRAFT SEQUENCE, 19 unordered pieces.    40     13  1
BQ513824|BQ513824.1 EST621239 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMIH94 5' end, mRNA sequence.    40     13  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 143,969,360

 psg: 0.78  gvh: 0.38  alm: 0.73  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSC270 is mit

>SSC270Z.Seq
----------AAAAAAAAAATAAAAAAAGAAAAAATAATGTATCAAACACACACAACATT
CAATAACTCNATCATTTGATAACCCAAATGTACAACCCCAAAAAAAAAAAAATCAAAAAA
TCAAAAAAATTTTATTTTTCCATTAAATATATTTAGAAATAATATAAAATCTATTTCCAA
AAAATAAAAATAAAAANNAAAATGATGGTGATATTTAAAAATAGAAATAAAAAAAATATA
TAAAAAAAAAATTTATAAAAAAA