>SSC265 (SSC265Q) /CSM/SS/SSC2-C/SSC265Q.Seq.d/
XXXXXXXXXXTAATTAGGGCCATAATGACATGTTTGACAATATTTTTGAAATTGGGTTTT
TGGTATAAGGATTTAGTATATTATCTTTTCTTTGAAATCATCCCAATCAGTCTTTTACTT
TTTATCATCAATGAAATGACATATAAAGCTGGAAATATTGTTTTTGGTGGTCAACAACAT
TCTGAAGTAACCGAAAATTCAAGATTAACTGAAACTNCCAATTATTTAATTGCTAAATAT
TCAAATTCTGGGGNNNNGGGTGTTAATAAATAATAATTTATTATGAATAAAATGGGATTT
TGTGTTGAAAATATTAATAAATATACTAAAAAAAAAAAAAAAGTAAAAAAAAAAAAAAAA
AAACAAATTGTTTTTTTAAACAAAAAAGGAAAAAAATAAAAATAAAATAAAAATAAAATA
AAAAAAAATAAAAAAAAAAAAACAATACTTAGAAAGAGTAAAATCA

---IRAIMTCLTIFLKLGFWYKDLVYYLFFEIIPISLLLFIINEMTYKAGNIVFGGQQHS
EVTENSRLTETXNYLIAKYSNSGXXGVNK**fimnkmgfcveninkytkkkkkvkkkkkk
qivflnkkgkk*k*nknkikknkkkktilrkski

Frame A:
---n*ghndmfdnifeigflv*gfsilsfl*nhpnqsftfyhq*ndi*swkycfwwsttf
*snrkfkin*nxqlfnc*ifkfwgxgc**iiiyye*ngilc*ky**iy*kkkkskkkkkk
tncffkqkrkkikik*k*nkkk*kkknnt*ke*n


Frame B:
---IRAIMTCLTIFLKLGFWYKDLVYYLFFEIIPISLLLFIINEMTYKAGNIVFGGQQHS
EVTENSRLTETXNYLIAKYSNSGXXGVNK**fimnkmgfcveninkytkkkkkvkkkkkk
qivflnkkgkk*k*nknkikknkkkktilrkski


Frame C:
---lgp**hv*qyf*nwvfgiri*yiifslkssqsvfyflssmk*hikleilflvvnnil
k*pkiqd*lklpii*llniqilgxxvlinnnll*ikwdfvlkilinilkkkkk*kkkkkn
klff*tkkeknknkikik*kkikkkkqylervks

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC265 (SSC265Q) /CSM/SS/SSC2-C/SSC265Q.Seq.d/                        599   e-170
SSC432 (SSC432Q) /CSM/SS/SSC4-B/SSC432Q.Seq.d/                        444   e-124
VHA693 (VHA693Q) /CSM/VH/VHA6-D/VHA693Q.Seq.d/                         38   0.12
SSH676 (SSH676Q) /CSM/SS/SSH6-D/SSH676Q.Seq.d/                         38   0.12
CHQ783 (CHQ783Q) /CSM/CH/CHQ7-D/CHQ783Q.Seq.d/                         38   0.12
CHK767 (CHK767Q) /CSM/CH/CHK7-C/CHK767Q.Seq.d/                         38   0.12
VFM590 (VFM590Q) /CSM/VF/VFM5-D/VFM590Q.Seq.d/                         36   0.45
VFH818 (VFH818Q) /CSM/VF/VFH8-A/VFH818Q.Seq.d/                         36   0.45
VFG312 (VFG312Q) /CSM/VF/VFG3-A/VFG312Q.Seq.d/                         36   0.45
VFB623 (VFB623Q) /CSM/VF/VFB6-A/VFB623Q.Seq.d/                         36   0.45

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BH109156|BH109156.1 RPCI-24-401O23.TJ RPCI-24 Mus musculus genomic clone RPCI-24-401O23 , DNA sequence.    50  0.024  1
AC124706|AC124706.3 Mus musculus chromosome UNK clone RP24-69G17, WORKING DRAFT SEQUENCE, 3 unordered pieces.    50  0.024  1
AZ680351|AZ680351.1 ENTMO10TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36  0.072  3
AZ536365|AZ536365.1 ENTCC89TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    30  0.076  3
BH146439|BH146439.1 ENTPG61TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    30  0.078  3
BH166578|BH166578.1 ENTRU13TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    30  0.079  3
AZ528561|AZ528561.1 ENTCU49TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36  0.080  3
BH166259|BH166259.1 ENTSP45TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36  0.087  3
AC112055|AC112055.3 Rattus norvegicus clone CH230-251F19, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    48  0.095  1
AX251092|AX251092.1 Sequence 60 from Patent WO0168912.            36  0.12  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT052100_1(BT052100|pid:none) Medicago truncatula clone MTYF9_FA...    37   0.21
AB193041_1(AB193041|pid:none) Solanum lycopersicum LeTH1 mRNA fo...    36   0.36
BT038476_1(BT038476|pid:none) Zea mays full-length cDNA clone ZM...    35   0.62
EU963263_1(EU963263|pid:none) Zea mays clone 260042 unknown mRNA.      35   0.81
AC105363_1(AC105363|pid:none) Oryza sativa (japonica cultivar-gr...    35   0.81
BT041243_1(BT041243|pid:none) Zea mays full-length cDNA clone ZM...    35   0.81
CR931687_15(CR931687|pid:none) Streptococcus pneumoniae strain 2...    34   1.4
H84433(H84433)hypothetical protein At2g02180 [imported] - Arabid...    34   1.4
EU975512_1(EU975512|pid:none) Zea mays clone 491224 unknown mRNA.      34   1.4
AB036427_1(AB036427|pid:none) Arabidopsis thaliana mRNA for TOM3...    34   1.4

 psg: 0.97  gvh: 0.41  alm: 0.26  top: 0.60  tms: 0.07  mit: 0.34  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.08  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSC265 is cyt

>SSC265Z.Seq
----------TAATTAGGGCCATAATGACATGTTTGACAATATTTTTGAAATTGGGTTTT
TGGTATAAGGATTTAGTATATTATCTTTTCTTTGAAATCATCCCAATCAGTCTTTTACTT
TTTATCATCAATGAAATGACATATAAAGCTGGAAATATTGTTTTTGGTGGTCAACAACAT
TCTGAAGTAACCGAAAATTCAAGATTAACTGAAACTNCCAATTATTTAATTGCTAAATAT
TCAAATTCTGGGGNNNNGGGTGTTAATAAATAATAATTTATTATGAATAAAATGGGATTT
TGTGTTGAAAATATTAATAAATATACTAAAAAAAAAAAAAAAGTAAAAAAAAAAAAAAAA
AAACAAATTGTTTTTTTAAACAAAAAAGGAAAAAAATAAAAATAAAATAAAAATAAAATA
AAAAAAAATAAAAAAAAAAAAACAATACTTAGAAAGAGTAAAATCA