>SSC249 (SSC249Q) /CSM/SS/SSC2-C/SSC249Q.Seq.d/
XXXXXXXXXXGCAATTAAATTCAATGGTGGTGGTCACGTAAATCACTCTATCTTTTGGAC
TAATTTAGCACCAAAAAATCAAGATGGTGGTGTTGCACCAAGTGGTCCATTGGCTGATGC
TATTAATAAACAATATGGATCAATTGAAAAATTAATTGAAAAAATGTCAGCTGAAACTAC
TGCAATTCAAGGTTCTGGTTGGGGTTGGTTAGGTTATGATAAAGCCAATGATCGTCTCGT
TATTCAAACTCAACAAAACCAAGATCCACTTTCAGTTTCTGGTTATGTTCCTTTATTAGG
TATTGATGTTTGGGAACATGCTTATTATCTTGATTATAAAAATGTTAGAGCAGACTATGT
TAAAAACATTTGGCAAATTGTTAATTGGAAGAATGTTGCTGAAAGATATAACACTGCCAA
AAAATAAATCATTTGTTTAAAATAGAATCAAAAAAATAAAAAAAAATAAAAAAAAAAAAC
ATTTTATTTAAAAAAAAAAAAAAA

---IKFNGGGHVNHSIFWTNLAPKNQDGGVAPSGPLADAINKQYGSIEKLIEKMSAETTA
IQGSGWGWLGYDKANDRLVIQTQQNQDPLSVSGYVPLLGIDVWEHAYYLDYKNVRADYVK
NIWQIVNWKNVAERYNTAKK*iiclk*nqknkkk*kkktfylkkkk

Frame A:
---qlnsmvvvt*itlsfgli*hqkikmvvlhqvvhwlmllinnmdqlkn*lkkcqlkll
qfkvlvgvg*vmikpmivslfklnktkihfqflvmfly*vlmfgnmliiliikmleqtml
ktfgklligrmllkditlpknksfv*nrikkikknkkkkhfi*kkkk


Frame B:
---n*iqwwwsrkslylld*fstkksrwwcctkwsig*cy**tiwin*kin*knvs*nyc
nsrfwlglvrl**sq*ssrysnstkprstfsfwlcsfiry*clgtclls*l*kc*srlc*
khlanc*leecc*ki*hcqkinhlfkieskk*kkikkknilfkkkkk


Frame C:
---IKFNGGGHVNHSIFWTNLAPKNQDGGVAPSGPLADAINKQYGSIEKLIEKMSAETTA
IQGSGWGWLGYDKANDRLVIQTQQNQDPLSVSGYVPLLGIDVWEHAYYLDYKNVRADYVK
NIWQIVNWKNVAERYNTAKK*iiclk*nqknkkk*kkktfylkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE837 (VSE837Q) /CSM/VS/VSE8-B/VSE837Q.Seq.d/                        870   0.0
VSE536 (VSE536Q) /CSM/VS/VSE5-B/VSE536Q.Seq.d/                        870   0.0
SSM325 (SSM325Q) /CSM/SS/SSM3-B/SSM325Q.Seq.d/                        870   0.0
SSE504 (SSE504Q) /CSM/SS/SSE5-A/SSE504Q.Seq.d/                        870   0.0
SSC249 (SSC249Q) /CSM/SS/SSC2-C/SSC249Q.Seq.d/                        870   0.0
SLA587 (SLA587Q) /CSM/SL/SLA5-D/SLA587Q.Seq.d/                        858   0.0
SSA566 (SSA566Q) /CSM/SS/SSA5-C/SSA566Q.Seq.d/                        819   0.0
VSJ604 (VSJ604Q) /CSM/VS/VSJ6-A/VSJ604Q.Seq.d/                        789   0.0
VSH246 (VSH246Q) /CSM/VS/VSH2-B/VSH246Q.Seq.d/                        755   0.0
VSA601 (VSA601Q) /CSM/VS/VSA6-A/VSA601Q.Seq.d/                        755   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CB097760|CB097760.1 ku44g07.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:SODM_CAEEL P31161 SUPEROXIDE DISMUTASE [MN] 1, MITOCHONDRIAL PRECURSOR ;, mRNA sequence.    98  7e-29  4
BI506560|BI506560.1 BB170021B20G02.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170021B20G02 5', mRNA sequence.    64  2e-21  3
BI773122|BI773122.1 kq45a09.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:SODM_CAEEL P31161 SUPEROXIDE DISMUTASE [MN] 1, MITOCHONDRIAL PRECURSOR ;, mRNA sequence.    60  2e-13  3
BI773242|BI773242.1 kx04b06.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:SODM_CAEEL P31161 SUPEROXIDE DISMUTASE [MN] 1, MITOCHONDRIAL PRECURSOR ;, mRNA sequence.    56  2e-11  3
CB888809|CB888809.1 taa42a04.x3 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:SODM_HUMAN P04179 SUPEROXIDE DISMUTASE [MN], MITOCHONDRIAL PRECURSOR ;, mRNA sequence.    42  2e-10  3
BP027282|BP027282.1 Ciona intestinalis cDNA, clone:cits47k03, 5' end, single read.    42  3e-08  3
BW161700|BW161700.1 Ciona intestinalis cDNA, clone:rcigd043i15, 3' end, single read.    42  3e-08  3
BW291148|BW291148.1 Ciona intestinalis cDNA, clone:cigd043i15, 5' end, single read.    42  3e-08  3
BW215493|BW215493.1 Ciona intestinalis cDNA, clone:cieg080a14, 5' end, single read.    42  4e-08  3
BW178889|BW178889.1 Ciona intestinalis cDNA, clone:rciht007b04, 3' end, single read.    42  4e-08  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX908798_270(BX908798|pid:none) Parachlamydia-related symbiont U...   234   1e-60
AB028460_1(AB028460|pid:none) Barbula unguiculata Mn-SOD mRNA fo...   199   4e-50
AJ278864_1(AJ278864|pid:none) Digitalis lanata partial mRNA for ...   192   4e-48
FJ941827_1(FJ941827|pid:none) Hemibarbus mylodon manganese super...   191   8e-48
AB117933_1(AB117933|pid:none) Marchantia paleacea var. diptera M...   189   3e-47
DQ812552_1(DQ812552|pid:none) Helianthus annuus Mn-superoxide di...   189   3e-47
AF242310_1(AF242310|pid:none) Euphorbia esula manganese superoxi...   188   5e-47
EU254488_1(EU254488|pid:none) Procambarus clarkii cytosolic mang...   187   9e-47
EF633506_1(EF633506|pid:none) Ginkgo biloba superoxide dismutase...   187   1e-46
AJ278863_1(AJ278863|pid:none) Digitalis lanata partial mRNA for ...   187   2e-46

 psg: 0.86  gvh: 0.37  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSC249 is nuc

>SSC249Z.Seq
----------GCAATTAAATTCAATGGTGGTGGTCACGTAAATCACTCTATCTTTTGGAC
TAATTTAGCACCAAAAAATCAAGATGGTGGTGTTGCACCAAGTGGTCCATTGGCTGATGC
TATTAATAAACAATATGGATCAATTGAAAAATTAATTGAAAAAATGTCAGCTGAAACTAC
TGCAATTCAAGGTTCTGGTTGGGGTTGGTTAGGTTATGATAAAGCCAATGATCGTCTCGT
TATTCAAACTCAACAAAACCAAGATCCACTTTCAGTTTCTGGTTATGTTCCTTTATTAGG
TATTGATGTTTGGGAACATGCTTATTATCTTGATTATAAAAATGTTAGAGCAGACTATGT
TAAAAACATTTGGCAAATTGTTAATTGGAAGAATGTTGCTGAAAGATATAACACTGCCAA
AAAATAAATCATTTGTTTAAAATAGAATCAAAAAAATAAAAAAAAATAAAAAAAAAAAAC
ATTTTATTTAAAAAAAAAAAAAAA