SSC246
Library SS
(Link to library)
Clone ID SSC246
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16350-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SSC246 (SSC246Q) /CSM/SS/SSC2-B/SSC246Q.Seq.d/
TNAAATACCAAATATAAAATAAATCAAATCAAATCAAAATAAAATAAATAAAATAAAATG
ACACTCTTTTCATCAATCTCATCAATGTCAAGTTCAATGACAAGCTCAAGATCTAGTTTC
TCATCATTTGGTAGTGGAACAAGTATGGGTTCAAATTCAATTGCATGTAGTGTCGGTAGT
GGTGGTGGTGGTTGTGGTAGTGGTAGTGGTGGTTGTGGTGATTTAACCGGTGGAGCTAAA
TCAAGTGGTGGTAGTTGTGGAGGAAAAGGTGGACCTCATAATCATGGCCATGGTAATGGT
CATGGACCACATGGTCATGGTGGTAAAGTNNCAGGAGGTTCATGTAGTTGTTAATATAAT
ATATACACACATATATATACTTTAAATATTACTTCAATTGTAATAATAAATTATTTAAAA
TAAAAATCGCTCCTATTTTAATTTTTTTTTTTTTCAAAAAAAAXXXXXXXXXX
sequence update 1998. 8. 3
Translated Amino Acid sequence
xntkykinqiksk*nk*NKMTLFSSISSMSSSMTSSRSSFSSFGSGTSMGSNSIACSVGS
GGGGCGSGSGGCGDLTGGAKSSGGSCGGKGGPHNHGHGNGHGPHGHGGKVXGGSCSC*yn
iythiytlnitsiviinylk*ksllf*ffffskk---


Translated Amino Acid sequence (All Frames)
Frame A:
xntkykinqiksk*nk*NKMTLFSSISSMSSSMTSSRSSFSSFGSGTSMGSNSIACSVGS
GGGGCGSGSGGCGDLTGGAKSSGGSCGGKGGPHNHGHGNGHGPHGHGGKVXGGSCSC*yn
iythiytlnitsiviinylk*ksllf*ffffskk---


Frame B:
xipnik*iksnqnkinkik*hsfhqshqcqvq*qaqdlvshhlvveqvwvqiqlhvvsvv
vvvvvvvvvvvvvi*pvelnqvvvvveekvdliimamvmvmdhmvmvvkxqevhvvvnii
ythiyil*illql***ii*nknrsyfnffffqk---


Frame C:
kyqi*nksnqikik*ik*ndtlfinlinvkfndklki*fliiw*wnkygfkfncm*cr*w
wwwlw*w*wwlw*fnrws*ikww*lwrkrwts*swpw*wswttwsww*sxrrfm*lli*y
ihtyiyfkyyfncnnklfkikiapiliffffkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSC246 (SSC246Q) /CSM/SS/SSC2-B/SSC246Q.Seq.d/ 246 3e-64
SLI522 (SLI522Q) /CSM/SL/SLI5-A/SLI522Q.Seq.d/ 238 6e-62
SLH539 (SLH539Q) /CSM/SL/SLH5-B/SLH539Q.Seq.d/ 238 6e-62
SLB664 (SLB664Q) /CSM/SL/SLB6-C/SLB664Q.Seq.d/ 238 6e-62
SHL790 (SHL790Q) /CSM/SH/SHL7-D/SHL790Q.Seq.d/ 238 6e-62
CHR471 (CHR471Q) /CSM/CH/CHR4-C/CHR471Q.Seq.d/ 238 6e-62
CHR272 (CHR272Q) /CSM/CH/CHR2-C/CHR272Q.Seq.d/ 238 6e-62
SSA602 (SSA602Q) /CSM/SS/SSA6-A/SSA602Q.Seq.d/ 232 4e-60
SSE102 (SSE102Q) /CSM/SS/SSE1-A/SSE102Q.Seq.d/ 230 2e-59
SSG873 (SSG873Q) /CSM/SS/SSG8-D/SSG873Q.Seq.d/ 206 2e-52

own update 2002.12.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X16827|X16827.1 Dictyostelium discoideum 2C mRNA. 238 e-125 3
AC115607|AC115607.2 Dictyostelium discoideum chromosome 2 map 4559693-4624405 strain AX4, complete sequence. 48 2e-07 4
U85057|U85057.1 Bos taurus blood coagulation factor XI precursor RNA, exons 13, 14 and 15, partial cds. 44 0.56 2
BX005317|BX005317.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-258B12. 38 5.5 2
AC125700|AC125700.4 Rattus norvegicus clone CH230-12K11, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 42 6.0 1
CA753751| (NM_026612) RIKEN cDNA 1810011O01 [Mus musculus], mRNA sequence. 42 6.0 1
BI809506|BI809506.1 F010H11 Oryza sativa mature leaf library induced by M.grisea Oryza sativa cDNA clone F010H11, mRNA sequence. 38 7.9 2
AP001251|AP001251.1 Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B5P9, LL56-APP region. 42 13 3
AP001679|AP001679.1 Homo sapiens genomic DNA, chromosome 21q, section 23/105. 42 46 3

dna update 2003. 7.21
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 165,238,965
protein update 2009. 6. 9
PSORT

psg: 0.92 gvh: 0.51 alm: 0.52 top: 0.47 tms: 0.00 mit: 0.35 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.50 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: nuclear
20.0 %: cytoplasmic
20.0 %: mitochondrial
8.0 %: cytoskeletal
8.0 %: plasma membrane
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SSC246 is nuc

5' end seq. ID SSC246F
5' end seq.
>SSC246F.Seq
TNAAATACCAAATATAAAATAAATCAAATCAAATCAAAATAAAATAAATAAAATAAAATG
ACACTCTTTTCATCAATCTCATCAATGTCAAGTTCAATGACAAGCTCAAGATCTAGTTTC
TCATCATTTGGTAGTGGAACAAGTATGGGTTCAAATTCAATTGCATGTAGTGTCGGTAGT
GGTGGTGGTGGTTGTGGTAGTGGTAGTGGTGGTTGTGGTGATTTAACCGGTGGAGCTAAA
TCAAGTGGTGGTAGTTGTGGAGGAAAAGGTGGACCTCATAATCATGGCCATGGTAATGGT
CATGGACCACATGGTCATGGTGGTAAAGTNNCAGGAGGTTCATGTAGTTGTTAATATAAT
ATATACACACATATATATACTTTAAATATTACTTCAATTGTAATAATAAATTATTTAAAA
TAAAAATCGCTCCTATTTTAATTTTTTTTTTTTTCAAAAAAAA
Length of 5' end seq. 463
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -