>SSC240 (SSC240Q) /CSM/SS/SSC2-B/SSC240Q.Seq.d/
ACCAAATCAAGGTTTCCTACAATTATTTAACTTACCAAGATGCAATTAATGATCTTCCAA
TGGATTCTTGTAATGAAGTGATTTTCAATGGAGGTTGTGAAGAGAATTATATTATCACTT
CCATTCTTAAAGGAACTTGTAGCCCAATTAAAGTCAATGACACTGAGGCTTGGACTTATT
CAACTTGTGATGAAAATTCTATGCTAAGCTATATTTGTAGTGAACCAACTTGTTTCATTG
GTAACTGTTATGCCATTCCAAATGTTTACAAAAATAGTACTCAATGTGTTCCAGGTCGTG
ATCTTGACGGTAATATTGCAGATGGTATCTATTATAAATTTGTTCCAAAATTAAAAAGTC
AACCAAAACCATCTTCACCAACCCCATCTCAAACCAGTACTCCAATTTCAGAAGATGAAG
ACCCAAATCATTCTTCAAAAGTTTTTGCCTCAATTGCTTTAATTATTTTTGGTTTATTAT
TATCATCTCTTTAAGTTTATAAAAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAXXXXXXXXXX

QIKVSYNYLTYQDAINDLPMDSCNEVIFNGGCEENYIITSILKGTCSPIKVNDTEAWTYS
TCDENSMLSYICSEPTCFIGNCYAIPNVYKNSTQCVPGRDLDGNIADGIYYKFVPKLKSQ
PKPSSPTPSQTSTPISEDEDPNHSSKVFASIALIIFGLLLSSL*vykkvkkkkkkkkkkk
---

Frame A:
tksrfptii*ltkmqlmifqwilvmk*fsmevvkriilslpflkelvaqlksmtlrlgli
qlvmkilc*aifvvnqlvslvtvmpfqmftkivlnvfqvviltvilqmvsiinlfqn*kv
nqnhlhqphlkpvlqfqkmktqiilqkflpqll*lflvyyyhlfkfikk*kkkkkkkkkk
k---


Frame B:
pnqgflqlfnlprcn**ssngfl**sdfqwrl*relyyhfhs*rnl*pn*sq*h*gldlf
nl**kfyaklyl**tnlfhw*llchskclqk*ysmcsrs*s*r*ycrwyll*icskikks
tktiftnpisnqysnfrr*rpksffksfclncfnyfwfiiiislsl*kskkkkkkkkkkk
k---


Frame C:
QIKVSYNYLTYQDAINDLPMDSCNEVIFNGGCEENYIITSILKGTCSPIKVNDTEAWTYS
TCDENSMLSYICSEPTCFIGNCYAIPNVYKNSTQCVPGRDLDGNIADGIYYKFVPKLKSQ
PKPSSPTPSQTSTPISEDEDPNHSSKVFASIALIIFGLLLSSL*vykkvkkkkkkkkkkk
---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM887 (SSM887Q) /CSM/SS/SSM8-D/SSM887Q.Seq.d/                        991   0.0
SSM401 (SSM401Q) /CSM/SS/SSM4-A/SSM401Q.Seq.d/                        991   0.0
SSM368 (SSM368Q) /CSM/SS/SSM3-C/SSM368Q.Seq.d/                        991   0.0
SSJ752 (SSJ752Q) /CSM/SS/SSJ7-C/SSJ752Q.Seq.d/                        991   0.0
SSJ433 (SSJ433Q) /CSM/SS/SSJ4-B/SSJ433Q.Seq.d/                        991   0.0
SSJ110 (SSJ110Q) /CSM/SS/SSJ1-A/SSJ110Q.Seq.d/                        991   0.0
SSH892 (SSH892Q) /CSM/SS/SSH8-D/SSH892Q.Seq.d/                        991   0.0
SSH569 (SSH569Q) /CSM/SS/SSH5-C/SSH569Q.Seq.d/                        991   0.0
SSH504 (SSH504Q) /CSM/SS/SSH5-A/SSH504Q.Seq.d/                        991   0.0
SSH364 (SSH364Q) /CSM/SS/SSH3-C/SSH364Q.Seq.d/                        991   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   991  0.0  1
BZ449840|BZ449840.1 BONHM21TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONHM21, DNA sequence.    48  0.11  1
BX571716|BX571716.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-148L14.    48  0.11  1
AP001196|AP001196.2 Homo sapiens genomic DNA, chromosome 18p11.3 clone:RP11-737E6, WORKING DRAFT SEQUENCE, 34 unordered pieces.    42  0.20  5
AL592465|AL592465.8 Mouse DNA sequence from clone RP23-36C4 on chromosome 11.    46  0.45  1
AZ850991|AZ850991.1 2M0153L08F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC2M0153L08 F, DNA sequence.    46  0.45  1
X02819|X02819.1 Fission yeast cob gene for cytochrome b.          46  0.45  1
X54421|X54421.1 Schizosaccharomyces pombe complete mitochondrial genome.    46  0.45  1
AC012075|AC012075.10 Homo sapiens clone RP11-492P1, complete sequence.    40  0.84  4
BX005430|BX005430.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-19E4.    48  1.2  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_86(AC116305|pid:none) Dictyostelium discoideum chromoso...   262   5e-69
CP000609_1249(CP000609|pid:none) Methanococcus maripaludis C5, c...    34   2.9
AJ235273_42(AJ235273|pid:none) Rickettsia prowazekii strain Madr...    33   4.9
CP001348_2597(CP001348|pid:none) Clostridium cellulolyticum H10,...    33   6.4
AX647501_1(AX647501|pid:none) Sequence 1693 from Patent EP1270724.     32   8.4

 psg: 0.76  gvh: 0.37  alm: 0.21  top: 0.70  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SSC240 is cyt

>SSC240F.Seq
ACCAAATCAAGGTTTCCTACAATTATTTAACTTACCAAGATGCAATTAATGATCTTCCAA
TGGATTCTTGTAATGAAGTGATTTTCAATGGAGGTTGTGAAGAGAATTATATTATCACTT
CCATTCTTAAAGGAACTTGTAGCCCAATTAAAGTCAATGACACTGAGGCTTGGACTTATT
CAACTTGTGATGAAAATTCTATGCTAAGCTATATTTGTAGTGAACCAACTTGTTTCATTG
GTAACTGTTATGCCATTCCAAATGTTTACAAAAATAGTACTCAATGTGTTCCAGGTCGTG
ATCTTGACGGTAATATTGCAGATGGTATCTATTATAAATTTGTTCCAAAATTAAAAAGTC
AACCAAAACCATCTTCACCAACCCCATCTCAAACCAGTACTCCAATTTCAGAAGATGAAG
ACCCAAATCATTCTTCAAAAGTTTTTGCCTCAATTGCTTTAATTATTTTTGGTTTATTAT
TATCATCTCTTTAAGTTTATAAAAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA----------