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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC235
Library SS
(Link to library)
Clone ID SSC235
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16581-1
Original site URL
Representative seq. ID SSC235F
(Link to Original site)
Representative DNA sequence 
>SSC235 (SSC235Q) /CSM/SS/SSC2-B/SSC235Q.Seq.d/
ANTAAATAAAAAAAAAAAAAAAAAAAATAAAAAAAAATTTAATAAGTTTTAAAATGGTAT
AGTTTTAATAAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAATAAAAAAT
AAAAAAAAAAAAAATAAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATA
AAAAAGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAAAAAAAAAAC
TTTTAAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTC
TCCCCCTTTGCTTTGCATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCCACTAACGAT
GCTCCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTAT
AAGCAGTCTTTAACAAAAAAAAATATTTAAAAAAAAAAAAAAAXXXXXXXXXX
sequence update 1998. 8. 5
Translated Amino Acid sequence 
xk*kkkkkk*kki**vlkwysfnkkkkkttiisskkkiknkkkknkkk***aipwdleki
kkfkkkiknnkk*kknkkknf*nspstfwcfc*ANAKVSLSPFALHYSPQAQIISSSTND
APQVSSGLIHHIPMQLSQMYKQSLTKKNI*kkkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
xk*kkkkkk*kki**vlkwysfnkkkkkttiisskkkiknkkkknkkk***aipwdleki
kkfkkkiknnkk*kknkkknf*nspstfwcfc*ANAKVSLSPFALHYSPQAQIISSSTND
APQVSSGLIHHIPMQLSQMYKQSLTKKNI*kkkk---


Frame B:
xnkkkkkknkkkfnkf*ngivlikkkkkplslvvkkk*kikkkkikknnnklyhgt*rk*
kslkkk*kiiknkkkikkktfktllllfgasvklmlrclsppllcitllklr*srapltm
llkypqg*sitflcnslkcissl*qkkifkkkk---


Frame C:
*ikkkkkkikknlisfkmv*f**kkkknhyh***kknkk*kkkk*kkiiisytmglrenk
kv*kknkk**kikkk*kkkllklsfyflvllls*c*gvslplcfallssssdnlelh*rc
sssilrvnpshsyatlsnv*avfnkkkylkkkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/                        387   e-106
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/                        387   e-106
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/                        387   e-106
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/                        387   e-106
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/                        387   e-106
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/                        387   e-106
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/                        387   e-106
SSL845 (SSL845Q) /CSM/SS/SSL8-B/SSL845Q.Seq.d/                        387   e-106
SSL836 (SSL836Q) /CSM/SS/SSL8-B/SSL836Q.Seq.d/                        387   e-106
SSL768 (SSL768Q) /CSM/SS/SSL7-C/SSL768Q.Seq.d/                        387   e-106
own update 2004. 8.26
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                   387  e-126  3
BZ463651|BZ463651.1 BONRK12TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRK12, DNA sequence.    50  0.025  1
AC100496|AC100496.1 Mus musculus clone RP23-143E17, LOW-PASS SEQUENCE SAMPLING.    44  1.5  2
AC109150|AC109150.4 Mus musculus clone RP24-536C12, WORKING DRAFT SEQUENCE, 6 ordered pieces.    44  1.5  1
AC093987|AC093987.6 Rattus norvegicus clone CH230-36D18, WORKING DRAFT SEQUENCE, 5 unordered pieces.    42  6.0  1
AL356014|AL356014.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F25L23.    42  6.0  1
AC098812|AC098812.3 Papio cynocephalus anubis clone RP41-440G22, complete sequence.    42  6.0  1
AC113975|AC113975.4 Mus musculus clone RP23-140P24, WORKING DRAFT SEQUENCE, 5 ordered pieces.    42  6.0  1
AX508705|AX508705.1 Sequence 3400 from Patent WO0216655.          42  6.0  1
AL844180|AL844180.6 Mouse DNA sequence from clone RP23-403A4 on chromosome 4.    44     11  2
dna update 2003. 7.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000654_38(CP000654|pid:none) Enterobacter sp. 638, complete se...    32   9.1
protein update 2009. 1.27
PSORT 

 psg: 0.90  gvh: 0.38  alm: 0.51  top: 0.37  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for SSC235 is cyt
5' end seq. ID SSC235F
5' end seq. 
>SSC235F.Seq
ANTAAATAAAAAAAAAAAAAAAAAAAATAAAAAAAAATTTAATAAGTTTTAAAATGGTAT
AGTTTTAATAAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAATAAAAAAT
AAAAAAAAAAAAAATAAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATA
AAAAAGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAAAAAAAAAAC
TTTTAAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTC
TCCCCCTTTGCTTTGCATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCCACTAACGAT
GCTCCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTAT
AAGCAGTCTTTAACAAAAAAAAATATTTAAAAAAAAAAAAAAA----------
Length of 5' end seq. 463
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -