SSC228
Library SS
(Link to library)
Clone ID SSC228
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01537-1
Original site URL
Representative seq. ID SSC228Z
(Link to Original site)
Representative DNA sequence
>SSC228 (SSC228Q) /CSM/SS/SSC2-B/SSC228Q.Seq.d/
XXXXXXXXXXTATATGATGGTATTTGTAATGTTTGTGATGGATTTATACAATTTGTTCAC
CCAAGAGATACACATCATTTATTATCATTTCAAGCACTTCAATCAAGAGCCAGGAAGAGA
AATATTACAATATTATGGTATTAAATGTGATGTGTCTACAGTGGTTTTAATTGATGAATC
TATTGATAGAGTTTATGTAAAATCATCAGCAATCTTAACAGTTTGTTATCATTTAAATGC
ACCATTTTCTTATTTATATTCATTCACCTATGTACCAACATTTGTTAGAGATATTTGTTA
TGATGTTTTTGGGAAATATAGATATTTAATTATGGGAAAGAAAGATACTTGTATGTTTAG
TATCACTTTAAGAGATAAATTCATTGACTTTAAAAGTCCATTAATATTGGATGAAGAACA
AAGTGAAGAAAAGGAATTGTAAAAAAGTTTTTTGTGTAAAAATAAAAATAGAAAAATAAA
AATAGAAAAAAATAAAAAATAAAAAATAAATAAACAAAACAATAAT
sequence update 1997. 9. 4
Translated Amino Acid sequence
---MMVFVMFVMDLYNLFTQEIHIIYYHFKHFNQEPGREILQYYGIKCDVSTVVLIDESI
DRVYVKSSAILTVCYHLNAPFSYLYSFTYVPTFVRDICYDVFGKYRYLIMGKKDTCMFSI
TLRDKFIDFKSPLILDEEQSEEKEL*ksflcknknrkikieknkk*kinkqnnn


Translated Amino Acid sequence (All Frames)
Frame A:
---i*wyl*cl*wiyticspkrytsfiiisstsiksqeekyynimvlnvmclqwf*lmnl
liefm*nhqqs*qfvii*mhhfliyihspmyqhlleifvmmflgnidi*lwerkilvclv
sl*einsltlkvh*ywmknkvkkrnckkvfcvkikiek*k*kkiknkk*inkti


Frame B:
---ydgicnvcdgfiqfvhprdthhllsfqalqsrarkrnitilwy*m*cvysgfn**iy
**slckiisnlnsllsfkctiflfifihlctnic*ryll*cfwei*ifnygkerylyv*y
hfkr*ih*l*ksinig*rtk*rkgivkkffv*k*k*knknrkk*kiknk*tkq*


Frame C:
---MMVFVMFVMDLYNLFTQEIHIIYYHFKHFNQEPGREILQYYGIKCDVSTVVLIDESI
DRVYVKSSAILTVCYHLNAPFSYLYSFTYVPTFVRDICYDVFGKYRYLIMGKKDTCMFSI
TLRDKFIDFKSPLILDEEQSEEKEL*ksflcknknrkikieknkk*kinkqnnn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSC228 (SSC228Q) /CSM/SS/SSC2-B/SSC228Q.Seq.d/ 809 0.0
SSI614 (SSI614Q) /CSM/SS/SSI6-A/SSI614Q.Seq.d/ 720 0.0
SSI807 (SSI807Q) /CSM/SS/SSI8-A/SSI807Q.Seq.d/ 624 e-178
VSH690 (VSH690Q) /CSM/VS/VSH6-D/VSH690Q.Seq.d/ 597 e-170
VHG532 (VHG532Q) /CSM/VH/VHG5-B/VHG532Q.Seq.d/ 36 0.52
SSB482 (SSB482Q) /CSM/SS/SSB4-D/SSB482Q.Seq.d/ 36 0.52
SSB480 (SSB480Q) /CSM/SS/SSB4-D/SSB480Q.Seq.d/ 36 0.52
VSD103 (VSD103Q) /CSM/VS/VSD1-A/VSD103Q.Seq.d/ 34 2.0
VFJ651 (VFJ651Q) /CSM/VF/VFJ6-C/VFJ651Q.Seq.d/ 34 2.0
VFH809 (VFH809Q) /CSM/VF/VFH8-A/VFH809Q.Seq.d/ 34 2.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL121724|AL121724.19 Human DNA sequence from clone RP1-29P5 on chromosome 6q16.1-16.2. 44 4e-05 4
AC007374|AC007374.6 Homo sapiens chromosome 14 clone RP11-325L17 map 14q31, complete sequence. 48 0.11 1
AL121784|AL121784.5 Human chromosome 14 DNA sequence BAC R-305I3 of library RPCI-11 from chromosome 14 of Homo sapiens (Human). 48 0.11 1
AC080013|AC080013.17 Homo sapiens 3 BAC RP11-379F4 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 40 0.15 3
AC102654|AC102654.2 Mus musculus clone RP23-2K13, WORKING DRAFT SEQUENCE, 4 unordered pieces. 38 0.26 7
BJ033025|BJ033025.1 Xenopus laevis cDNA clone:XL019i11, 5' end, single read. 46 0.43 1
BG552805|BG552805.1 dab80a11.y1 NICHD XGC Emb4 Xenopus laevis cDNA clone IMAGE:4203188 5' similar to TR:O73710 O73710 ZYGOTIC DNA REPLICATION FACTOR MCM6B. ;, mRNA sequence. 46 0.43 1
BJ038441|BJ038441.1 Xenopus laevis cDNA clone:XL043h09, 5' end, single read. 46 0.43 1
AE014827|AE014827.1 Plasmodium falciparum 3D7 chromosome 14 section 12 of 13 of the complete sequence. 32 0.88 7
CA854467|CA854467.1 PfESToac29c06.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5', mRNA sequence. 38 0.97 2
dna update 2003. 7.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AP003215_4(AP003215|pid:none) Oryza sativa Japonica Group genomi... 62 2e-13
(P40761) Uncharacterized protein yuxK (ORF2). &AL009126_3256(AL... 54 5e-13
EU956944_1(EU956944|pid:none) Zea mays clone 1578265 thiol-disul... 58 3e-12
CP001101_421(CP001101|pid:none) Chlorobium phaeobacteroides BS1,... 57 6e-11
CP001097_697(CP001097|pid:none) Chlorobium limicola DSM 245, com... 56 6e-11
EF585907_1(EF585907|pid:none) Sonneratia caseolaris isolate Sonn... 47 1e-10
CP001327_115(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 52 3e-10
CP000560_2743(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 47 6e-10
CP000228_43(CP000228|pid:none) Bacillus cereus Q1 plasmid pBc239... 65 8e-10
AP006627_1194(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c... 52 8e-10
protein update 2009. 6. 9
PSORT

psg: 0.75 gvh: 0.53 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: mitochondrial
8.0 %: peroxisomal

>> prediction for SSC228 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSC228Z
3' end seq.
>SSC228Z.Seq
----------TATATGATGGTATTTGTAATGTTTGTGATGGATTTATACAATTTGTTCAC
CCAAGAGATACACATCATTTATTATCATTTCAAGCACTTCAATCAAGAGCCAGGAAGAGA
AATATTACAATATTATGGTATTAAATGTGATGTGTCTACAGTGGTTTTAATTGATGAATC
TATTGATAGAGTTTATGTAAAATCATCAGCAATCTTAACAGTTTGTTATCATTTAAATGC
ACCATTTTCTTATTTATATTCATTCACCTATGTACCAACATTTGTTAGAGATATTTGTTA
TGATGTTTTTGGGAAATATAGATATTTAATTATGGGAAAGAAAGATACTTGTATGTTTAG
TATCACTTTAAGAGATAAATTCATTGACTTTAAAAGTCCATTAATATTGGATGAAGAACA
AAGTGAAGAAAAGGAATTGTAAAAAAGTTTTTTGTGTAAAAATAAAAATAGAAAAATAAA
AATAGAAAAAAATAAAAAATAAAAAATAAATAAACAAAACAATAAT
Length of 3' end seq. 516
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -