SSC225
Library SS
(Link to library)
Clone ID SSC225
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16142-1
Original site URL
Representative seq. ID SSC225Z
(Link to Original site)
Representative DNA sequence
>SSC225 (SSC225Q) /CSM/SS/SSC2-B/SSC225Q.Seq.d/
XXXXXXXXXXATATTAGATACAGCAGGTCAAGATGAATTAACCGCTATGAGAGATCAATG
GATTAGATCATGTGAAGGATTCGTATTGGTTTATTCAGTAACATCAAGATCATCATTTGA
CCAAATTGCATTCTTCAAAGAACAAATTAATCGTGTATTAGATAGTGATGATGTANCAAT
AATGATGATTGGTAATAAATCAGATTTAGATGATGAAAGACAAGTAACCTATCAAGAAGG
TAAAGATTTAGCACGTTGTTTTGGCATGTCATTCATGGAAGTCTCTGCTAAAACCAGATC
AAATATTGAAGAAGTTTTCAATGAAACAGTTCGTTGTGTAAAAAGAAAATATGATTTACA
TAATAAAGATAAATCAAAAGATGGAAAAGATATTAAAAAGAAAAATTCAATAATTAAAAA
ATTAAATCAAAAAGTAAATAATACTAAAAATTCAATTTGTAAAATGANNTAAATAATTTG
GAATTAAAATATATATGTAAANATTACTAATTGTAAATAATTCGCGCGCACCGATATCGA
GTAAGANTCTNACNTGTGTGTATAATTAAATATATAAATATAAAAAC
sequence update 1997. 9. 4
Translated Amino Acid sequence
---LDTAGQDELTAMRDQWIRSCEGFVLVYSVTSRSSFDQIAFFKEQINRVLDSDDVXIM
MIGNKSDLDDERQVTYQEGKDLARCFGMSFMEVSAKTRSNIEEVFNETVRCVKRKYDLHN
KDKSKDGKDIKKKNSIIKKLNQKVNNTKNSICKMX*iiwn*niyvxitnck*fartdie*
xsxxcv*lni*i*k


Translated Amino Acid sequence (All Frames)
Frame A:
---y*iqqvkmn*pl*eingldhvkdsywfiq*hqdhhltklhssknklivy*ivmmxq*
**lvinqi*mmkdk*pikkvki*hvvlachswksllkpdqilkkfsmkqfvv*kenmiyi
ikinqkmekilkrkiq*lkn*ikk*iilkiqfvk*xk*fgikiym*xllivnnsrapiss
kxltcvyn*iykykn


Frame B:
---irysrsr*inryersmd*im*ririglfsnikiii*pncilqrtn*scir***cxnn
ddw**irfr**ktsnlsrr*rfstlfwhvihgslc*nqiky*rsfq*nsslckkki*ft*
*r*ikrwkry*kekfnn*kiksksk*y*kfnl*nxxnnlelkyickxy*l*iirahryrv
rxxxvciikyinik


Frame C:
---LDTAGQDELTAMRDQWIRSCEGFVLVYSVTSRSSFDQIAFFKEQINRVLDSDDVXIM
MIGNKSDLDDERQVTYQEGKDLARCFGMSFMEVSAKTRSNIEEVFNETVRCVKRKYDLHN
KDKSKDGKDIKKKNSIIKKLNQKVNNTKNSICKMX*iiwn*niyvxitnck*fartdie*
xsxxcv*lni*i*k


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSL159 (SSL159Q) /CSM/SS/SSL1-C/SSL159Q.Seq.d/ 686 0.0
SSK746 (SSK746Q) /CSM/SS/SSK7-B/SSK746Q.Seq.d/ 686 0.0
SSC740 (SSC740Q) /CSM/SS/SSC7-B/SSC740Q.Seq.d/ 686 0.0
SSC225 (SSC225Q) /CSM/SS/SSC2-B/SSC225Q.Seq.d/ 686 0.0
SSB878 (SSB878Q) /CSM/SS/SSB8-D/SSB878Q.Seq.d/ 686 0.0
SSD305 (SSD305Q) /CSM/SS/SSD3-A/SSD305Q.Seq.d/ 660 0.0
VSD558 (VSD558Q) /CSM/VS/VSD5-C/VSD558Q.Seq.d/ 434 e-121
SSC696 (SSC696Q) /CSM/SS/SSC6-D/SSC696Q.Seq.d/ 410 e-114
FC-AB05 (FC-AB05Q) /CSM/FC/FC-AB/FC-AB05Q.Seq.d/ 400 e-111
SSE872 (SSE872Q) /CSM/SS/SSE8-C/SSE872Q.Seq.d/ 327 1e-88

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M62610|M62610.1 D.disocoideum ras mRNA, complete cds. 48 4e-11 4
K02114|K02114.1 Slime mold (D.discoideum) ras-homologous ge... 48 2e-10 4
Z11804|Z11804.1 D.discoideum ras gene. 48 8e-10 4
AC115610|AC115610.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence. 36 0.008 4
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 38 0.011 9
AC068970|AC068970.6 Homo sapiens BAC clone RP11-84F8 from 2, complete sequence. 46 0.022 3
BE844677|BE844677.1 EST422 Apis mellifera male antennae Lambda ZAP II library Apis mellifera cDNA clone pAmmaG198 5' similar to RAS2 protein of Drosophila melanogaster, mRNA sequence. 50 0.031 1
Z18926|Z18926.1 D.discoideum rasC gene. 50 0.031 1
AC117267|AC117267.1 Dictyostelium discoideum chromosome 2 map 4767688-4790343 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 36 0.063 4
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence. 40 0.077 5
dna update 2003. 7.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55CB7) RecName: Full=Ras-like protein rasY; Flags: Precursor; 218 9e-56
(Q55CC0) RecName: Full=Ras-like protein rasW; Flags: Precursor; 210 3e-53
(Q55CB0) RecName: Full=Ras-like protein rasU; Flags: Precursor; 166 6e-40
(P03967) RecName: Full=Ras-like protein rasD; AltName: Full=Tran... 132 5e-30
(Q12526) RecName: Full=Ras-like protein; Flags: Precursor; 126 4e-28
CR382123_579(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 126 4e-28
(O93856) RecName: Full=Ras-like protein; Flags: Precursor; &AF0... 126 4e-28
M62610_1(M62610|pid:none) D.disocoideum ras mRNA, complete cds. 126 5e-28
TVDORS(A01371)transforming protein ras - slime mold (Dictyosteli... 126 5e-28
(P22280) RecName: Full=Ras-like protein 3; Flags: Precursor; &M... 125 8e-28
protein update 2009. 6. 9
PSORT

psg: 0.75 gvh: 0.45 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 1.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: nuclear
20.0 %: cytoplasmic
20.0 %: plasma membrane
8.0 %: extracellular, including cell wall
8.0 %: Golgi
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for SSC225 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSC225Z
3' end seq.
>SSC225Z.Seq
----------ATATTAGATACAGCAGGTCAAGATGAATTAACCGCTATGAGAGATCAATG
GATTAGATCATGTGAAGGATTCGTATTGGTTTATTCAGTAACATCAAGATCATCATTTGA
CCAAATTGCATTCTTCAAAGAACAAATTAATCGTGTATTAGATAGTGATGATGTANCAAT
AATGATGATTGGTAATAAATCAGATTTAGATGATGAAAGACAAGTAACCTATCAAGAAGG
TAAAGATTTAGCACGTTGTTTTGGCATGTCATTCATGGAAGTCTCTGCTAAAACCAGATC
AAATATTGAAGAAGTTTTCAATGAAACAGTTCGTTGTGTAAAAAGAAAATATGATTTACA
TAATAAAGATAAATCAAAAGATGGAAAAGATATTAAAAAGAAAAATTCAATAATTAAAAA
ATTAAATCAAAAAGTAAATAATACTAAAAATTCAATTTGTAAAATGANNTAAATAATTTG
GAATTAAAATATATATGTAAANATTACTAATTGTAAATAATTCGCGCGCACCGATATCGA
GTAAGANTCTNACNTGTGTGTATAATTAAATATATAAATATAAAAAC
Length of 3' end seq. 577
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -