>SSC222 (SSC222Q) /CSM/SS/SSC2-A/SSC222Q.Seq.d/
AACTAATCAAATAAAATTTTTAAAACTATAATTATTAATTTAATAAAAATAATAAAAANA
AAAATGTTTAAAAAATTACTTTTCTTTACTTTAACTTTTGCTCTCTTTGCTTTAGCAATT
TGTGATAATTCAATTAAAATCACTCAAACATTAAGTAGTGCTTGGGAAGGACATTCAACA
TGGAATGTAGTAATAGAAAACATTGGAGATAAACCTATCTTTGGTGCTACCATCGTTGCC
GAATCTGGTTTAAGCCTCGAAAGACCAGATAATCTTTGGTCATTAGATTCATTAGGTAAT
AATAGATTTGGTCTCCCATCTTGGATTACTCAAAATGGTGGTCTTAAAGCTTTCAATGGT
ACTCATACATTTGGTTACACTAATGCTCAACNAACTTCAGCAGTATTCTCAGCCACTGAT
ATTANATATCAAATAAACCAAAAAAAACACTAAAAAAATCCCCAAAAACTATTTAAAATT
ACTTTATTAATTAATTAATTAAATATTTAC

n*SNKIFKTIIINLIKIIKXKMFKKLLFFTLTFALFALAICDNSIKITQTLSSAWEGHST
WNVVIENIGDKPIFGATIVAESGLSLERPDNLWSLDSLGNNRFGLPSWITQNGGLKAFNG
THTFGYTNAQXTSAVFSATDIXYQINQKKH*knpqklfkitllin*lniy

Frame A:
n*SNKIFKTIIINLIKIIKXKMFKKLLFFTLTFALFALAICDNSIKITQTLSSAWEGHST
WNVVIENIGDKPIFGATIVAESGLSLERPDNLWSLDSLGNNRFGLPSWITQNGGLKAFNG
THTFGYTNAQXTSAVFSATDIXYQINQKKH*knpqklfkitllin*lniy


Frame B:
tnqikflkl*lli**k**kxkclknyfsll*lllsll*qfviiqlkslkh*vvlgkdiqh
gm***ktleinlslvlpslpnlv*askdqiifgh*ih*viidlvshlgllkmvvlklsmv
lihlvtlmlnxlqqysqplilxik*tkkntkkipknylklly*lin*if


Frame C:
lik*nf*nyny*fnknnkxknv*kitflyfnfcslcfsnl**fn*nhsnik*clgrtfnm
ecsnrkhwr*tylwcyhrcriwfkprktr*slvirfir***iwspildyskwws*sfqwy
syiwlh*cstnfssilsh*yxisnkpkktlkkspkti*nyfin*likyl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM627 (SSM627Q) /CSM/SS/SSM6-B/SSM627Q.Seq.d/                        688   0.0
SSJ675 (SSJ675Q) /CSM/SS/SSJ6-D/SSJ675Q.Seq.d/                        688   0.0
SSG579 (SSG579Q) /CSM/SS/SSG5-D/SSG579Q.Seq.d/                        688   0.0
SSE756 (SSE756Q) /CSM/SS/SSE7-C/SSE756Q.Seq.d/                        688   0.0
SSC222 (SSC222Q) /CSM/SS/SSC2-A/SSC222Q.Seq.d/                        688   0.0
CHS326 (CHS326Q) /CSM/CH/CHS3-B/CHS326Q.Seq.d/                        688   0.0
SSG168 (SSG168Q) /CSM/SS/SSG1-C/SSG168Q.Seq.d/                        652   0.0
SSC746 (SSC746Q) /CSM/SS/SSC7-B/SSC746Q.Seq.d/                        642   0.0
SSF357 (SSF357Q) /CSM/SS/SSF3-C/SSF357Q.Seq.d/                        626   e-179
SSG613 (SSG613Q) /CSM/SS/SSG6-A/SSG613Q.Seq.d/                        617   e-176

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC122256|AC122256.3 Mus musculus chromosome 7 clone RP23-178H7, complete sequence.    46  0.019  2
AC112789|AC112789.3 Mus musculus chromosome UNK clone RP23-151J21, WORKING DRAFT SEQUENCE, 55 unordered pieces.    46  0.41  1
AL928819|AL928819.6 Mouse DNA sequence *** SEQUENCING CANCELLED *** from clone  RP23-73M3.    46  0.41  1
AC115012|AC115012.4 Mus musculus clone RP24-192J5, WORKING DRAFT SEQUENCE, 5 ordered pieces.    46  0.41  1
AC096790|AC096790.6 Rattus norvegicus clone CH230-6M14, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44  1.6  1
AC111541|AC111541.4 Rattus norvegicus clone CH230-159J13, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    44  1.6  1
AL663021|AL663021.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041M06.    40  2.1  2
BX547933|BX547933.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-87L9.    40  3.3  2
AL132875|AL132875.22 Human DNA sequence from clone RP1-92C4 on chromosome 6q14.1-15  Contains ESTs, STSs and GSSs. Contains the 3' part of a novel gene.    42  6.5  1
BX176054|BX176054.1 Danio rerio genomic clone DKEY-181E17, genomic survey sequence.    42  6.5  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_44(AC116956|pid:none) Dictyostelium discoideum chromoso...    81   2e-14
A68688_1(A68688|pid:none) Sequence 2 from Patent WO9801569.  &AF...    44   0.002
AJ299386_1(AJ299386|pid:none) Heterodera schachtii partial mRNA ...    42   0.009
AP009153_1221(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DN...    37   0.37
(P22698) RecName: Full=Spore germination protein 270-11;  &B3562...    35   0.82
T18270(T18270) hypothetical protein - slime mold (Dictyostelium ...    35   1.1
AF056110_1(AF056110|pid:none) Globodera rostochiensis beta-1,4-e...    34   2.4
AF004523_1(AF004523|pid:none) Globodera rostochiensis beta-1,4-e...    34   2.4
EU176871_1(EU176871|pid:none) Pratylenchus coffeae GHF5 endogluc...    33   3.1
AE017345_494(AE017345|pid:none) Cryptococcus neoformans var. neo...    33   5.3

 psg: 0.78  gvh: 0.75  alm: 0.26  top: 0.13  tms: 0.07  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 20.0 %: Golgi
	 12.0 %: nuclear
	 12.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SSC222 is mit

>SSC222E.Seq
AACTAATCAAATAAAATTTTTAAAACTATAATTATTAATTTAATAAAAATAATAAAAANA
AAAATGTTTAAAAAATTACTTTTCTTTACTTTAACTTTTGCTCTCTTTGCTTTAGCAATT
TGTGATAATTCAATTAAAATCACTCAAACATTAAGTAGTGCTTGGGAAGGACATTCAACA
TGGAATGTAGTAATAGAAAACATTGGAGATAAACCTATCTTTGGTGCTACCATCGTTGCC
GAATCTGGTTTAAGCCTCGAAAGACCAGATAATCTTTGGTCATTAGATTCATTAGGTAAT
AATAGATTTGGTCTCCCATCTTGGATTACTCAAAATGGTGGTCTTAAAGCTTTCAATGGT
ACTCATACATTTGGTTACACTAATGCTCAACNAACTTCAGCAGTATTCTCAGCCACTGAT
ATTANATATCAAATAAACCAAAAAAAACACTAAAAAAATCCCCAAAAACTATTTAAAATT
ACTTTATTAATTAATTAATTAAATATTTAC