>SSC218 (SSC218Q) /CSM/SS/SSC2-A/SSC218Q.Seq.d/
XXXXXXXXXXATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGTACCTTCCAAAGA
AAACCATTCCAATCAGTCATTGATTTAGTATCAAAGGNTGAATATATTACAAAGTTAACT
GCCGTTTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACGTATCGTCGAAAGTGAT
GATATCGAATTAATTGGTGGTATAGATAAATATATTTCCGTTTGCCGTGGTTGCTACAAT
AGTGATCAAAATGAAGGAAATAGTACCAAACCAAGCAAAACCGCACGTCATTNTCATTNT
CAAAGCGCACCATCCGTTGCTCCACTTGCTGTAAACATTAATCCTGATGATCATTTAAAT
AATGATTATTAATTATGAAGATCCTAATTATATTTGTACATTNTAAATTTTAATCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---QGKTVIIAALDGTFQRKPFQSVIDLVSKXEYITKLTAVCMVCYNEAAFSKRIVESDD
IELIGGIDKYISVCRGCYNSDQNEGNSTKPSKTARHXHXQSAPSVAPLAVNINPDDHLNN
DY*l*rs*lylyixnfnqkkkkkkkkkkkkkkkk

Frame A:
---sr*nryncrtrwylpkktipish*fsikg*iyykvncrlygllq*srlfktyrrk**
yrinwwyr*iyfrlpwllq**sk*rk*yqtkqnrtsxsxskrtircstcckh*s**sfk*
*llimkiliifvhxkf*skkkkkkkkkkkkkkkk


Frame B:
---QGKTVIIAALDGTFQRKPFQSVIDLVSKXEYITKLTAVCMVCYNEAAFSKRIVESDD
IELIGGIDKYISVCRGCYNSDQNEGNSTKPSKTARHXHXQSAPSVAPLAVNINPDDHLNN
DY*l*rs*lylyixnfnqkkkkkkkkkkkkkkkk


Frame C:
---kvkpl*lph*mvpskenhsnqsli*yqrxnilqs*lpfvwfatmkppfqnvsskvmi
sn*lvv*inifpfavvativikmkeivpnqakphvixixkahhpllhll*tlilmii*im
iinyedpnyictx*ilikkkkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC218 (SSC218Q) /CSM/SS/SSC2-A/SSC218Q.Seq.d/                        779   0.0
SSH134 (SSH134Q) /CSM/SS/SSH1-B/SSH134Q.Seq.d/                        771   0.0
SSF620 (SSF620Q) /CSM/SS/SSF6-A/SSF620Q.Seq.d/                        771   0.0
SSE604 (SSE604Q) /CSM/SS/SSE6-A/SSE604Q.Seq.d/                        771   0.0
SSE242 (SSE242Q) /CSM/SS/SSE2-B/SSE242Q.Seq.d/                        771   0.0
SSC741 (SSC741Q) /CSM/SS/SSC7-B/SSC741Q.Seq.d/                        771   0.0
SSC346 (SSC346Q) /CSM/SS/SSC3-B/SSC346Q.Seq.d/                        771   0.0
SSB238 (SSB238Q) /CSM/SS/SSB2-B/SSB238Q.Seq.d/                        771   0.0
SSA406 (SSA406Q) /CSM/SS/SSA4-A/SSA406Q.Seq.d/                        771   0.0
AFB533 (AFB533Q) /CSM/AF/AFB5-B/AFB533Q.Seq.d/                        771   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF510846|AF510846.1 Dictyostelium discoideum calmodulin-binding protein ThyB (thyB) mRNA, complete cds.   771  0.0  1
U61990|U61990.1 Dictyostelium discoideum ThyB (thyB) mRNA, complete cds.   730  0.0  1
AZ692494|AZ692494.1 ENTJU18TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48  0.095  1
AC004037|AC004037.1 Homo sapiens chromosome 5, BAC clone 64o24, BAC 5001 (LBNL H101), complete sequence.    44  1.5  1
AC129713|AC129713.1 Homo sapiens chromosome 5 clone RP11-391B2, complete sequence.    44  1.5  1
AC105530|AC105530.4 Rattus norvegicus clone CH230-220G8, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    44  1.5  1
BD048929|BD048929.1 Sequence tag and encoded human protein.       44  1.5  1
BI639194|BI639194.1 SD21708.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD21708 5, mRNA sequence.    32  1.9  3
AI531016|AI531016.1 SD01870.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD01870 5prime, mRNA sequence.    32  1.9  3
AC100770|AC100770.2 Homo sapiens chromosome 11, clone RP11-46P12, complete sequence.    42  2.5  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ441416_85(DQ441416|pid:none) Variola virus strain Benin, Dahom...   103   2e-21
(P04364) RecName: Full=Thymidine kinase;          EC=2.7.1.21;  ...   103   2e-21
AF163843_1(AF163843|pid:none) Ectromelia virus thymidine kinase ...   102   5e-21
(P68563) RecName: Full=Thymidine kinase;          EC=2.7.1.21;  ...   102   5e-21
AF163844_1(AF163844|pid:none) Cowpox virus thymidine kinase gene...   102   5e-21
(P23335) RecName: Full=Thymidine kinase;          EC=2.7.1.21;  ...   101   7e-21
AF410153_63(AF410153|pid:none) Swinepox virus isolate 17077-99, ...   101   7e-21
AM905441_1(AM905441|pid:none) Suberites domuncula mRNA for thymi...   101   9e-21
K02581_1(K02581|pid:none) Human thymidine kinase mRNA, complete ...   100   1e-20
M11945_1(M11945|pid:none) Mouse cytosolic thymidine kinase mRNA ...   100   1e-20

 psg: 0.59  gvh: 0.53  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSC218 is cyt

>SSC218Z.Seq
----------ATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGTACCTTCCAAAGA
AAACCATTCCAATCAGTCATTGATTTAGTATCAAAGGNTGAATATATTACAAAGTTAACT
GCCGTTTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACGTATCGTCGAAAGTGAT
GATATCGAATTAATTGGTGGTATAGATAAATATATTTCCGTTTGCCGTGGTTGCTACAAT
AGTGATCAAAATGAAGGAAATAGTACCAAACCAAGCAAAACCGCACGTCATTNTCATTNT
CAAAGCGCACCATCCGTTGCTCCACTTGCTGTAAACATTAATCCTGATGATCATTTAAAT
AATGATTATTAATTATGAAGATCCTAATTATATTTGTACATTNTAAATTTTAATCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA