SSC206
Library SS
(Link to library)
Clone ID SSC206
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15659-1
Original site URL
Representative seq. ID SSC206E
(Link to Original site)
Representative DNA sequence
>SSC206 (SSC206Q) /CSM/SS/SSC2-A/SSC206Q.Seq.d/
GGGTTATCTAAAAAGATTGAAACAACCGATGGTACATTCACTTTCTGTGGTACACCAGAG
TATTTAGCACCAGAGGTATTGAATGGTCATGGTCATGGTTGTGCCGTCGATTGGTGGTCT
CTTGGAACTCTTCTCTATGAGATGTTAACTGGTTTACCACCTTTCTACTCTCAAAATGTA
TCAACAATGTATCAAAAAATTTTAAATGGTGAATTAAAAATTCCAACTTATATTTCACCA
GAAGCAAAATCATTATTAGAAGGTTTATTAACTAGAGAAGTTGATAAAAGACTTGGAACT
AAAGGTGGTGGTGAAGTTAAACAACATCCATGGTTCAAAAATATTGACTGGGAGAAATTG
GATAGAAAAGAAGTTGAAGTTCACTTTAAACCAAAAGTTAAATCTGGCACAGATATTAGT
CAAATTGATCCAGTTTTCACTCAAGAAAGACCAATGGATAGTTTGGTTGAAACCAGTGCT
TTAGGTGATGCTATGGGTAAAGATACAAGCTTTGAAGGTTTCACTTATGTAGCTGATTCA
ATCTTAAAGGATTAAAAAAA
sequence update 1997. 9. 4
Translated Amino Acid sequence
GLSKKIETTDGTFTFCGTPEYLAPEVLNGHGHGCAVDWWSLGTLLYEMLTGLPPFYSQNV
STMYQKILNGELKIPTYISPEAKSLLEGLLTREVDKRLGTKGGGEVKQHPWFKNIDWEKL
DRKEVEVHFKPKVKSGTDISQIDPVFTQERPMDSLVETSALGDAMGKDTSFEGFTYVADS
ILKD*k


Translated Amino Acid sequence (All Frames)
Frame A:
GLSKKIETTDGTFTFCGTPEYLAPEVLNGHGHGCAVDWWSLGTLLYEMLTGLPPFYSQNV
STMYQKILNGELKIPTYISPEAKSLLEGLLTREVDKRLGTKGGGEVKQHPWFKNIDWEKL
DRKEVEVHFKPKVKSGTDISQIDPVFTQERPMDSLVETSALGDAMGKDTSFEGFTYVADS
ILKD*k


Frame B:
gylkrlkqpmvhslsvvhqsi*hqry*mvmvmvvpsiggllelfsmrc*lvyhlstlkmy
qqcikkf*mvn*kfqlifhqkqnhy*kvy*leklikdlelkvvvklnnihgskiltgrnw
iekklkftlnqklnlaqilvkliqfslkkdqwivwlkpvl*vmlwvkiqalkvslm*liq
s*rikk


Frame C:
vi*kd*nnrwyihflwytrvfstrgiewswswlcrrlvvswnssl*dvnwfttfllskci
nnvsknfkw*iknsnlyftrskiiirrfin*rs**ktwn*rww*s*ttsmvqky*lgeig
*krs*ssl*tks*iwhry*sn*ssfhsrktng*fg*nqcfr*cyg*rykl*rfhlcs*fn
lkglkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSC206 (SSC206Q) /CSM/SS/SSC2-A/SSC206Q.Seq.d/ 1096 0.0
AFA767 (AFA767Q) /CSM/AF/AFA7-C/AFA767Q.Seq.d/ 1043 0.0
AFA783 (AFA783Q) /CSM/AF/AFA7-D/AFA783Q.Seq.d/ 1027 0.0
VFO624 (VFO624Q) /CSM/VF/VFO6-A/VFO624Q.Seq.d/ 1013 0.0
AFL755 (AFL755Q) /CSM/AF/AFL7-C/AFL755Q.Seq.d/ 1013 0.0
SSE740 (SSE740Q) /CSM/SS/SSE7-B/SSE740Q.Seq.d/ 1007 0.0
VFK237 (VFK237Q) /CSM/VF/VFK2-B/VFK237Q.Seq.d/ 963 0.0
VFJ888 (VFJ888Q) /CSM/VF/VFJ8-D/VFJ888Q.Seq.d/ 959 0.0
VFA754 (VFA754Q) /CSM/VF/VFA7-C/VFA754Q.Seq.d/ 940 0.0
FC-AR01 (FC-AR01Q) /CSM/FC/FC-AR/FC-AR01Q.Seq.d/ 900 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M59744|M59744.1 D.discoideum protein kinase 2 mRNA, complete cds. 1088 0.0 1
AX771572|AX771572.1 Sequence 285 from Patent WO03004646. 44 2e-11 3
U15210|U15210.1 Dictyostelium discoideum rac-alpha serine/threonine kinase homolog mRNA, complete cds. 44 2e-11 3
AF093877|AF093877.1 Dictyostelium discoideum rac serine/threonine kinase homolog mRNA, complete cds. 54 3e-10 3
CB734516|CB734516.1 AMGNNUC:MRBE4-00008-E12-A rat brain E15 (10375) Rattus norvegicus cDNA clone mrbe4-00008-e12 5', mRNA sequence. 60 3e-05 1
D49836|D49836.1 Rat mRNA for RAC protein kinase gamma, complete cds. 60 3e-05 1
CD247003|CD247003.1 AGENCOURT_14100292 NIH_MGC_172 Homo sapiens cDNA 5', mRNA sequence. 54 0.002 1
AC122671|AC122671.5 Rattus norvegicus clone CH230-87H4, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 58 0.002 2
BU136130|BU136130.1 603123719F1 CSEQCHL23 Gallus gallus cDNA clone ChEST89f6 5', mRNA sequence. 44 0.091 2
AC108777|AC108777.3 Mus musculus clone RP23-368H22, WORKING DRAFT SEQUENCE, 32 ordered pieces. 48 0.12 1
dna update 2003. 7.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A38578(A38578) protein kinase 2 (EC 2.7.1.-) - slime mold (Dicty... 382 e-105
AB218429_1(AB218429|pid:none) Schizophyllum commune stk-5 mRNA f... 195 6e-49
CR382131_275(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 182 4e-45
AF046923_1(AF046923|pid:none) Colletotrichum trifolii serine/thr... 179 3e-44
AE017350_106(AE017350|pid:none) Cryptococcus neoformans var. neo... 179 6e-44
CU633872_113(CU633872|pid:none) Podospora anserina genomic DNA c... 176 4e-43
(P18961) RecName: Full=Serine/threonine-protein kinase YPK2/YKR2... 175 8e-43
L06196_1(L06196|pid:none) Entamoeba histolytica serine/threonine... 174 2e-42
AM270012_2(AM270012|pid:none) Aspergillus niger contig An02c0170... 171 2e-41
CR382129_154(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 168 1e-40
protein update 2009. 7. 6
PSORT

psg: 0.91 gvh: 0.45 alm: 0.48 top: 0.20 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: cytoplasmic
24.0 %: nuclear
20.0 %: extracellular, including cell wall
8.0 %: endoplasmic reticulum
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for SSC206 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSC206E
Full length Seq.
>SSC206E.Seq
GGGTTATCTAAAAAGATTGAAACAACCGATGGTACATTCACTTTCTGTGGTACACCAGAG
TATTTAGCACCAGAGGTATTGAATGGTCATGGTCATGGTTGTGCCGTCGATTGGTGGTCT
CTTGGAACTCTTCTCTATGAGATGTTAACTGGTTTACCACCTTTCTACTCTCAAAATGTA
TCAACAATGTATCAAAAAATTTTAAATGGTGAATTAAAAATTCCAACTTATATTTCACCA
GAAGCAAAATCATTATTAGAAGGTTTATTAACTAGAGAAGTTGATAAAAGACTTGGAACT
AAAGGTGGTGGTGAAGTTAAACAACATCCATGGTTCAAAAATATTGACTGGGAGAAATTG
GATAGAAAAGAAGTTGAAGTTCACTTTAAACCAAAAGTTAAATCTGGCACAGATATTAGT
CAAATTGATCCAGTTTTCACTCAAGAAAGACCAATGGATAGTTTGGTTGAAACCAGTGCT
TTAGGTGATGCTATGGGTAAAGATACAAGCTTTGAAGGTTTCACTTATGTAGCTGATTCA
ATCTTAAAGGATTAAAAAAA
Length of full length seq. 560