SSC196 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SSC196
Library	SS (Link to library)
Clone ID	SSC196 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U10839-1\|Contig-U15438-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SS/SSC1-D/SSC196Q.Seq.d/
Representative seq. ID	SSC196P (Link to Original site)
Representative DNA sequence	>SSC196 (SSC196Q) /CSM/SS/SSC1-D/SSC196Q.Seq.d/ ATCAAATCAAATAAAACAAAAAAAATAAACAAAAACTATATTGAATTAAATTTAATAAAT AAAATAAAAAAAAAAAAAAAAAATTTGAAAAAAAAAAAATAATGGCATCAAATTTATTAG TTCCTCAGGACATTCGTTTACCATCAATACTTGGTTATATACTTAGTGGAAAAGAACTTG AGGTTATTTTAAAAAAAAACCAGGAAGAATCGGCAAAGGTATATAAAAGAAATAAAAATT TAGAAAATGATATTAAAAATCATAGAGTTAAAGAGGAAGAATATTTGAAAATTATTGAAC AATTGGAAAAACATAATAATGAACTTTCAAAGAAATTAAATTGTTACATTGGCAAAACTA CAATTCCAGAAAATGGTATTAAGGAGTATGATATAATTATTGATATTCCAGCAGTTGATT ATTTTTCACAAAAAGAAACAGCATGGTTAATTTTTCTTTCTCAAAAATTAAAAGAAAAAA TGAATGGACCAAATGGTTTTAACCCTTTAGAACCATTTAATTCATTATTTGCAGAATTTA AAAAATACTCAACTCTTGCATGTTTAGGTTGTTTTAATATTGGTAAAACATTCTTTATCA ATAAATTXXXXXXXXXXAATTTTTACTTCTTTTGACAAAGATGGTGATGGTAACTTATCA TGGGATGAAGTTTTCTCTCGTATGAGCTCAAATTCCAATATTAAGGATCCACTTGCTGCC ACAAAATCAATGTTTGATCATTATAATCGTGATGCTGATACTGAAAACCTTTCCATCCAG GAAATTAGAGAAGTTTTAATGTCCAAGAAAATTAAACAAGATTTAATCAGAACTGAAAAA GCTCTCAGATCCAAGGTCAAAGATTTCCGTAAGAAATATGACACTGATAATGACGGTGTT GTAACATTTGATGAAATGTATCAATTGTACCTTAAAGATCCGGATTTTGATGAAGAAGAT GATGAATTAAGTGCTGAAGAAAGGGAAAAAGCTAAATGCAGAAGAGCCAAAAGCTCATGC AGATACTTCTTTAGTGCTGTTGATAAGGATAAGAACGATAAATTATCCTATCTAGAAATT CATGAATATCTTAAAAAACATCCAGAATTTGATCTTGGTCCATCCCAATAAAAAAATGGT TTTCTTTCTTTAAAAGGTTTTTAAAGTTTTTTTTTTTTACATTCAATTAAAAATTTATAC CAAACTTTAAAAAAAAAAAAG
sequence update	1998. 7.30
Translated Amino Acid sequence	qiknkknkqklyikfnkNKKKKKKFEKKKIMASNLLVPQDIRLPSILGYILSGKELE VILKKNQEESAKVYKRNKNLENDIKNHRVKEEEYLKIIEQLEKHNNELSKKLNCYIGKTT IPENGIKEYDIIIDIPAVDYFSQKETAWLIFLSQKLKEKMNGPNGFNPLEPFNSLFAEFK KYSTLACLGCFNIGKTFFINK--- ---IFTSFDKDGDGNLSWDEVFSRMSSNSNIKDPLAATKSMFDHYNRDADTENLSIQEIR EVLMSKKIKQDLIRTEKALRSKVKDFRKKYDTDNDGVVTFDEMYQLYLKDPDFDEEDDEL SAEEREKAKCRRAKSSCRYFFSAVDKDKNDKLSYLEIHEYLKKHPEFDLGPSQkngfls lkgf*sffflhsiknlyqtlkkkk
Translated Amino Acid sequence (All Frames)	Frame A: iksnktkkinknyielnlinkikkkkknlkkkkwhqiyflrtfvyhqylviylveknl rlfkktrknrqryikeikikmilkiielkrknikllnnwkniimnfqrnivtlakl qfqkmvlrsmillifqqliifhkkkqhgffflknkkkmdqmvltlnhlihylqnl kntqllhvvvlilvkhslsin--- ---nfyffqrwwlimgsflsyelkfqygstcchkinvslscykpfhpgn* rsfnvqentrfnqnkssqiqgqrfpeih*rccninvsivprsgfrri kcrkgksmqksqklmqillcc*geriilsrnsisktsriswsipikkwfsf fkrflkfffftfnkfipnfkkkk Frame B: snqikqkktktilniikkkkkkikkknngikfisssghsftintwlytwkrt* gyfkkkpgrigkgikkkfrkykssrgrifenytigkt*tfkeikllhwqny nsrkwygvynyyssslfftkrnsmvnfsfskikrknewtkwfpfrtifiicri kilnscmfrlfywnilyqi--- ---IFTSFDKDGDGNLSWDEVFSRMSSNSNIKDPLAATKSMFDHYNRDADTENLSIQEIR EVLMSKKIKQDLIRTEKALRSKVKDFRKKYDTDNDGVVTFDEMYQLYLKDPDFDEEDDEL SAEEREKAKCRRAKSSCRYFFSAVDKDKNDKLSYLEIHEYLKKHPEFDLGPSQkngfls lkgfsffflhsiknlyqtlkkkk Frame C: qiknkknkqklyikfnkNKKKKKKFEKKKIMASNLLVPQDIRLPSILGYILSGKELE VILKKNQEESAKVYKRNKNLENDIKNHRVKEEEYLKIIEQLEKHNNELSKKLNCYIGKTT IPENGIKEYDIIIDIPAVDYFSQKETAWLIFLSQKLKEKMNGPNGFNPLEPFNSLFAEFK KYSTLACLGCFNIGKTFFINK--- ---flllltkmvmvtyhgmkfslvaqipilrihllpqnqcliiiivmlilktfpsrkle kfcprklnkiselkklsdprskisvrnmtlimtvlhlmkcinctlkirilmkkmmn* vlkkgkklnaeepkahadtslvllirirtinypikfmnilkniqnlilvhpnkkmvffl kvfkvfffyiqlkiytkl*kkk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SSC196 (SSC196Q) /CSM/SS/SSC1-D/SSC196Q.Seq.d/ 1271 0.0 SSC840 (SSC840Q) /CSM/SS/SSC8-B/SSC840Q.Seq.d/ 1059 0.0 SSG510 (SSG510Q) /CSM/SS/SSG5-A/SSG510Q.Seq.d/ 1053 0.0 AFC270 (AFC270Q) /CSM/AF/AFC2-C/AFC270Q.Seq.d/ 1047 0.0 SSA637 (SSA637Q) /CSM/SS/SSA6-B/SSA637Q.Seq.d/ 1033 0.0 AHE480 (AHE480Q) /CSM/AH/AHE4-D/AHE480Q.Seq.d/ 1033 0.0 SSJ311 (SSJ311Q) /CSM/SS/SSJ3-A/SSJ311Q.Seq.d/ 1023 0.0 AFC322 (AFC322Q) /CSM/AF/AFC3-A/AFC322Q.Seq.d/ 1007 0.0 AHI876 (AHI876Q) /CSM/AH/AHI8-D/AHI876Q.Seq.d/ 997 0.0 AFJ271 (AFJ271Q) /CSM/AF/AFJ2-C/AFJ271Q.Seq.d/ 993 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AB070447\|AB070447.1 Dictyostelium discoideum cbpE mRNA for calcium binding protein CBP5, complete cds, clone:SSA637. 999 0.0 3 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 930 0.0 9 AC116956\|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 34 0.002 14 AC140958\|AC140958.3 Didelphis virginiana clone LB3-364A6, WORKING DRAFT SEQUENCE, 7 ordered pieces. 42 0.016 7 CC110793\|CC110793.1 NDL.25K3.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.25K3, DNA sequence. 52 0.016 1 AP004170\|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5. 32 0.017 13 AB063521\|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2. 42 0.020 12 AC117075\|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 38 0.039 8 BU581573\|BU581573.1 in38d07.y1 Human Fetal Pancreas 1B Homo sapiens cDNA clone IMAGE: 5' similar to SW:CALM_HUMAN P02593 CALMODULIN. [2] SW:CALM_HUMAN ;, mRNA sequence. 40 0.057 3 BF698329\|BF698329.1 602125484F1 NIH_MGC_56 Homo sapiens cDNA clone IMAGE:4282413 5', mRNA sequence. 40 0.057 3
dna update	2003. 7.20
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q869S9) RecName: Full=Calcium-binding protein E; AltName: Full=... 311 3e-83 AB070447_1(AB070447\|pid:none) Dictyostelium discoideum cbpE mRNA... 309 1e-82 (Q54QE8) RecName: Full=Heat shock protein DDB_G0283913; 146 2e-33 AF065248_1(AF065248\|pid:none) Entodinium caudatum centrin 2 mRNA... 48 6e-04 AF508736_1(AF508736\|pid:none) Gallus gallus Kv channel-interacti... 44 0.009 CR940353_624(CR940353\|pid:none) Theileria annulata strain Ankara... 42 0.043 AB050849_1(AB050849\|pid:none) Nicotiana tabacum mRNA for calmodu... 42 0.043 AX407244_1(AX407244\|pid:none) Sequence 15 from Patent WO0226984. 42 0.057 AF269284_1(AF269284\|pid:none) Rattus norvegicus potassium channe... 42 0.057 (Q9JM59) RecName: Full=Kv channel-interacting protein 2; ... 42 0.057
protein update	2009. 6. 9
PSORT	psg: 0.76 gvh: 0.35 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.05 nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: nuclear 40.0 %: cytoplasmic 4.0 %: Golgi 4.0 %: plasma membrane 4.0 %: vesicles of secretory system >> prediction for SSC196 is nuc
5' end seq. ID	SSC196F
5' end seq.	>SSC196F.Seq ATCAAATCAAATAAAACAAAAAAAATAAACAAAAACTATATTGAATTAAATTTAATAAAT AAAATAAAAAAAAAAAAAAAAAATTTGAAAAAAAAAAAATAATGGCATCAAATTTATTAG TTCCTCAGGACATTCGTTTACCATCAATACTTGGTTATATACTTAGTGGAAAAGAACTTG AGGTTATTTTAAAAAAAAACCAGGAAGAATCGGCAAAGGTATATAAAAGAAATAAAAATT TAGAAAATGATATTAAAAATCATAGAGTTAAAGAGGAAGAATATTTGAAAATTATTGAAC AATTGGAAAAACATAATAATGAACTTTCAAAGAAATTAAATTGTTACATTGGCAAAACTA CAATTCCAGAAAATGGTATTAAGGAGTATGATATAATTATTGATATTCCAGCAGTTGATT ATTTTTCACAAAAAGAAACAGCATGGTTAATTTTTCTTTCTCAAAAATTAAAAGAAAAAA TGAATGGACCAAATGGTTTTAACCCTTTAGAACCATTTAATTCATTATTTGCAGAATTTA AAAAATACTCAACTCTTGCATGTTTAGGTTGTTTTAATATTGGTAAAACATTCTTTATCA ATAAATT----------
Length of 5' end seq.	607
3' end seq. ID	SSC196Z
3' end seq.	>SSC196Z.Seq ----------AATTTTTACTTCTTTTGACAAAGATGGTGATGGTAACTTATCATGGGATG AAGTTTTCTCTCGTATGAGCTCAAATTCCAATATTAAGGATCCACTTGCTGCCACAAAAT CAATGTTTGATCATTATAATCGTGATGCTGATACTGAAAACCTTTCCATCCAGGAAATTA GAGAAGTTTTAATGTCCAAGAAAATTAAACAAGATTTAATCAGAACTGAAAAAGCTCTCA GATCCAAGGTCAAAGATTTCCGTAAGAAATATGACACTGATAATGACGGTGTTGTAACAT TTGATGAAATGTATCAATTGTACCTTAAAGATCCGGATTTTGATGAAGAAGATGATGAAT TAAGTGCTGAAGAAAGGGAAAAAGCTAAATGCAGAAGAGCCAAAAGCTCATGCAGATACT TCTTTAGTGCTGTTGATAAGGATAAGAACGATAAATTATCCTATCTAGAAATTCATGAAT ATCTTAAAAAACATCCAGAATTTGATCTTGGTCCATCCCAATAAAAAAATGGTTTTCTTT CTTTAAAAGGTTTTTAAAGTTTTTTTTTTTTACATTCAATTAAAAATTTATACCAAACTT TAAAAAAAAAAAAG
Length of 3' end seq.	604
Connected seq. ID	SSC196P
Connected seq.	>SSC196P.Seq ATCAAATCAAATAAAACAAAAAAAATAAACAAAAACTATATTGAATTAAATTTAATAAAT AAAATAAAAAAAAAAAAAAAAAATTTGAAAAAAAAAAAATAATGGCATCAAATTTATTAG TTCCTCAGGACATTCGTTTACCATCAATACTTGGTTATATACTTAGTGGAAAAGAACTTG AGGTTATTTTAAAAAAAAACCAGGAAGAATCGGCAAAGGTATATAAAAGAAATAAAAATT TAGAAAATGATATTAAAAATCATAGAGTTAAAGAGGAAGAATATTTGAAAATTATTGAAC AATTGGAAAAACATAATAATGAACTTTCAAAGAAATTAAATTGTTACATTGGCAAAACTA CAATTCCAGAAAATGGTATTAAGGAGTATGATATAATTATTGATATTCCAGCAGTTGATT ATTTTTCACAAAAAGAAACAGCATGGTTAATTTTTCTTTCTCAAAAATTAAAAGAAAAAA TGAATGGACCAAATGGTTTTAACCCTTTAGAACCATTTAATTCATTATTTGCAGAATTTA AAAAATACTCAACTCTTGCATGTTTAGGTTGTTTTAATATTGGTAAAACATTCTTTATCA ATAAATT----------AATTTTTACTTCTTTTGACAAAGATGGTGATGGTAACTTATCA TGGGATGAAGTTTTCTCTCGTATGAGCTCAAATTCCAATATTAAGGATCCACTTGCTGCC ACAAAATCAATGTTTGATCATTATAATCGTGATGCTGATACTGAAAACCTTTCCATCCAG GAAATTAGAGAAGTTTTAATGTCCAAGAAAATTAAACAAGATTTAATCAGAACTGAAAAA GCTCTCAGATCCAAGGTCAAAGATTTCCGTAAGAAATATGACACTGATAATGACGGTGTT GTAACATTTGATGAAATGTATCAATTGTACCTTAAAGATCCGGATTTTGATGAAGAAGAT GATGAATTAAGTGCTGAAGAAAGGGAAAAAGCTAAATGCAGAAGAGCCAAAAGCTCATGC AGATACTTCTTTAGTGCTGTTGATAAGGATAAGAACGATAAATTATCCTATCTAGAAATT CATGAATATCTTAAAAAACATCCAGAATTTGATCTTGGTCCATCCCAATAAAAAAATGGT TTTCTTTCTTTAAAAGGTTTTTAAAGTTTTTTTTTTTTACATTCAATTAAAAATTTATAC CAAACTTTAAAAAAAAAAAAG
Length of connected seq.	1211
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas