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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC191
Library SS
(Link to library)
Clone ID SSC191
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13439-1
Original site URL
Representative seq. ID SSC191Z
(Link to Original site)
Representative DNA sequence 
>SSC191 (SSC191Q) /CSM/SS/SSC1-D/SSC191Q.Seq.d/
XXXXXXXXXXAATGGAATTGGCTGTTCAAATTCAAATGGTAGATGTAATTTACAATCAAA
GCAATGTCAATGTGAATTACCATTTTATGGACAGTTTTGCCAATACAATAGAATTCCTTG
TGGTCAAAGATGTTTATTTTTAAATTCAACTTGTGGAATTCCTTCTAATNNTTTTAATGT
ATCATTTACATGTATTGAACCAAACATTGGTGATTTTTCAAATCAATCTCCAAAATTAAA
TAACAACAATTTTTATAAATCATTATTTATAATATTTTTATTTTTTATTTCAATTTAATA
AATATTTTTAATTTTAACAAATAAATAAAATTTATTATTATTATTTTTTTCTTAAAAAAA
AAAAAA
sequence update 1997. 9.28
Translated Amino Acid sequence 
---GIGCSNSNGRCNLQSKQCQCELPFYGQFCQYNRIPCGQRCLFLNSTCGIPSNXFNVS
FTCIEPNIGDFSNQSPKLNNNNFYKSLFIIFLFFISI**ifliltnk*nllllffs*kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---melavqiqmvdviynqsnvnvnyhfmdsfantieflvvkdvyf*iqlvefllxxlmy
hlhvlnqtlvifqinlqn*ittifinhyl*yfyflfqfnkyf*f*qinkiyyyyfflkkk
k


Frame B:
---wnwlfkfkw*m*ftikamsm*itilwtvlpiq*nslwskmfifkfnlwnsf*xf*ci
iymy*tkhw*ffksiskik*qqfl*iiiynififyfnlinifnfnk*ikfiiiifflkkk
k


Frame C:
---GIGCSNSNGRCNLQSKQCQCELPFYGQFCQYNRIPCGQRCLFLNSTCGIPSNXFNVS
FTCIEPNIGDFSNQSPKLNNNNFYKSLFIIFLFFISI**ifliltnk*nllllffs*kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK533 (SSK533Q) /CSM/SS/SSK5-B/SSK533Q.Seq.d/                        458   e-128
SSC191 (SSC191Q) /CSM/SS/SSC1-D/SSC191Q.Seq.d/                        458   e-128
CHK509 (CHK509Q) /CSM/CH/CHK5-A/CHK509Q.Seq.d/                        406   e-113
AFM537 (AFM537Q) /CSM/AF/AFM5-B/AFM537Q.Seq.d/                        335   3e-91
AHC264 (AHC264Q) /CSM/AH/AHC2-C/AHC264Q.Seq.d/                        113   2e-24
CFF419 (CFF419Q) /CSM/CF/CFF4-A/CFF419Q.Seq.d/                         40   0.023
AFI566 (AFI566Q) /CSM/AF/AFI5-C/AFI566Q.Seq.d/                         40   0.023
VFN806 (VFN806Q) /CSM/VF/VFN8-A/VFN806Q.Seq.d/                         34   1.4
VFL789 (VFL789Q) /CSM/VF/VFL7-D/VFL789Q.Seq.d/                         34   1.4
VFJ224 (VFJ224Q) /CSM/VF/VFJ2-A/VFJ224Q.Seq.d/                         34   1.4
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC123854|AC123854.3 Mus musculus chromosome 1 clone RP23-328J8, complete sequence.    48  0.036  2
AC126303|AC126303.4 Rattus norvegicus clone CH230-208A16, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.29  1
AC108777|AC108777.3 Mus musculus clone RP23-368H22, WORKING DRAFT SEQUENCE, 32 ordered pieces.    46  0.29  1
AC007555|AC007555.2 Homo sapiens chromosome 7 clone RP5-925B6, WORKING DRAFT SEQUENCE, 2 unordered pieces.    40  0.30  2
AC120953|AC120953.4 Rattus norvegicus clone CH230-433F7, WORKING DRAFT SEQUENCE, 1 ordered piece.    40  0.97  3
AC111961|AC111961.4 Rattus norvegicus clone CH230-115B20, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  1.2  1
AC118593|AC118593.2 Mus musculus clone RP24-464I2, WORKING DRAFT SEQUENCE, 19 unordered pieces.    44  1.2  1
AC113271|AC113271.3 Mus musculus clone RP23-376H8, WORKING DRAFT SEQUENCE, 11 ordered pieces.    44  1.2  1
AX594566|AX594566.1 Sequence 220 from Patent EP1258494.           44  1.2  1
Z69382|Z69382.1 S.cerevisiae 37,800 bp segment of chromosome XIV.    44  1.2  1
dna update 2003. 7.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF087257_1(EF087257|pid:none) Picea sitchensis clone WS02736_H04...    34   1.8
(Q27591) RecName: Full=Integrin beta-nu; Flags: Precursor;  &AE0...    33   3.0
AL035436_2(AL035436|pid:none) Drosophila melanogaster cosmid clo...    33   4.0
M16152_1(M16152|pid:none) Drosophila melanogaster Notch growth f...    33   4.0
DQ977037_2(DQ977037|pid:none) Saguinus labiatus NOTCH2 (NOTCH2) ...    32   8.9
protein update 2009. 1.27
PSORT 

 psg: 0.61  gvh: 0.53  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSC191 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSC191Z
3' end seq. 
>SSC191Z.Seq
----------AATGGAATTGGCTGTTCAAATTCAAATGGTAGATGTAATTTACAATCAAA
GCAATGTCAATGTGAATTACCATTTTATGGACAGTTTTGCCAATACAATAGAATTCCTTG
TGGTCAAAGATGTTTATTTTTAAATTCAACTTGTGGAATTCCTTCTAATNNTTTTAATGT
ATCATTTACATGTATTGAACCAAACATTGGTGATTTTTCAAATCAATCTCCAAAATTAAA
TAACAACAATTTTTATAAATCATTATTTATAATATTTTTATTTTTTATTTCAATTTAATA
AATATTTTTAATTTTAACAAATAAATAAAATTTATTATTATTATTTTTTTCTTAAAAAAA
AAAAAA
Length of 3' end seq. 356
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -