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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC190
Library SS
(Link to library)
Clone ID SSC190
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01589-1
Original site URL
Representative seq. ID SSC190P
(Link to Original site)
Representative DNA sequence 
>SSC190 (SSC190Q) /CSM/SS/SSC1-D/SSC190Q.Seq.d/
GATGGTTTTGGAATTAAAATTTTAATAACAGATACTGGTTATAGAAAATCTCATGAGGTT
TTTAAACATATGAAAATTATTGGTGAATATAATTTCTTAAAGAATAAAAATAATACACAA
GATGATTTTGATCCATTCTTTAAAGATGTAAATGAACAACAAACTGGCCATGGCACATTT
ACATTATCAACTTTGGGTGGTTATAGACCTGGTGTTTTAATAGGTGCAGCATATAATGCA
TCATTTTTATTAGCTGAAACTGAAAATGCTACAAGTGATTTCCCATTGGAGGAAGATAAT
TGGATTGCAGCTATTGAATGGGGTGAAAGCCATGGAGCTCAATTAGTATCCTCTTCATTG
GGTTACGAAAATTGGTATACCTATGCAAATAAGGATGGTCATTTGTCAAAAANNNNAAGA
GTGGCAACAATGGCAGTTAATAAAGGAATGGTGGTAGTAATGGGTGTTGGTAATTCTGGT
GATTTGGGTATGGGAATACCTGCAGATGCAGAATACGTTATATCAGTGGGTGCAATTGAT
TCAAATGGAGAAAGAACTGAATTCTCTTCAATTGGGCCCACTGCTGATGGGAGAATAAAX
XXXXXXXXXTTTAATATTTTCAGTATTGGTACAATCTGAAACAGCCTATTTTGGTTTAAA
AACCCATGGTGACCATAATGATTTTATTTTCAAATTAACAGATTCAGAAAAAATTAAAAA
AGCCAGAGATATTTTGTCTGGAAAGGAAACCAATGAAGTTCATGTAATGGGTAGAATTAG
AAAGAGACCTGAAAGCTATAATCCAAAGTATTCCTTTATTCTTGACCCAGATACAATCAC
ATTATTATCCATGGCTATTGAAGTTTGTGATGCTTCAACTATTTATGTAGAAGATCACCT
TGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGCCCATGGTCTTCAAAACT
AACAAGAGAAATTAAAATTTAAACTATAAGAGTAAAANTAAATTACTCATGATTAAATTT
AATCAAATTAAATACTTAAATATTTANTAATAAAGTTTATTAAACAAAAGTTTTTATA
sequence update 1998. 7.30
Translated Amino Acid sequence 
DGFGIKILITDTGYRKSHEVFKHMKIIGEYNFLKNKNNTQDDFDPFFKDVNEQQTGHGTF
TLSTLGGYRPGVLIGAAYNASFLLAETENATSDFPLEEDNWIAAIEWGESHGAQLVSSSL
GYENWYTYANKDGHLSKXXRVATMAVNKGMVVVMGVGNSGDLGMGIPADAEYVISVGAID
SNGERTEFSSIGPTADGRI---

---LIFSVLVQSETAYFGLKTHGDHNDFIFKLTDSEKIKKARDILSGKETNEVHVMGRIR
KRPESYNPKYSFILDPDTITLLSMAIEVCDASTIYVEDHLDEACGAFLPGCFWCPWSSKL
TREIKI*tirvkxnys*lnliklnt*ifxnkvy*tkvfi
Translated Amino Acid sequence (All Frames) 
Frame A:
DGFGIKILITDTGYRKSHEVFKHMKIIGEYNFLKNKNNTQDDFDPFFKDVNEQQTGHGTF
TLSTLGGYRPGVLIGAAYNASFLLAETENATSDFPLEEDNWIAAIEWGESHGAQLVSSSL
GYENWYTYANKDGHLSKXXRVATMAVNKGMVVVMGVGNSGDLGMGIPADAEYVISVGAID
SNGERTEFSSIGPTADGRI---

---fnifsigti*nslfwfknpw*p**fyfqinrfrkn*ksqryfvwkgnq*sscng*n*
ket*kl*skvflys*prynhiiihgy*sl*cfnylcrrsp**glwcfpprlllvpmvfkt
nkrn*nlnykskxkllmikfnqikylnix**sllnksfy

Frame B:
mvlelkf**qilvienlmrflni*kllvniis*rikiihkmilihslkm*mnnklamahl
hyqlwvvidlvf**vqhimhhfy*lklkmlqvishwrkiiglqllngvkameln*yplhw
vtkigipmqirmvicqkxxewqqwqlikeww**wvlvilviwvweylqmqntlyqwvqli
qmekelnslqlgpllmge*---

---LIFSVLVQSETAYFGLKTHGDHNDFIFKLTDSEKIKKARDILSGKETNEVHVMGRIR
KRPESYNPKYSFILDPDTITLLSMAIEVCDASTIYVEDHLDEACGAFLPGCFWCPWSSKL
TREIKI*tirvkxnys*lnliklnt*ifxnkvy*tkvfi

Frame C:
wfwn*nfnnrywl*kis*gf*tyenyw*i*flke*k*ytr*f*sil*rck*ttnwpwhiy
iinfgwl*twcfnrcsi*ciifis*n*kcyk*fpiggr*ldcsy*mg*kpwssisilfig
lrklvylck*gwsfvkxxksgnngs**rnggsngcw*fw*fgygntcrcriryisgcn*f
kwrkn*ilfnwahc*wenk---

---*yfqywynlkqpilv*kpmvtimilfsn*qiqkklkkpeifclerkpmkfm*wvele
rdlkaiiqsiplfltqiqshyypwllkfvmlqlfm*kitlmrpvvlssqvasgahglqn*
qeklkfkl*e*x*ithd*i*sn*ilkylxikfikqkfl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC190 (SSC190Q) /CSM/SS/SSC1-D/SSC190Q.Seq.d/                       1318   0.0
SSM239 (SSM239Q) /CSM/SS/SSM2-B/SSM239Q.Seq.d/                        553   e-156
SSK842 (SSK842Q) /CSM/SS/SSK8-B/SSK842Q.Seq.d/                        553   e-156
SSK637 (SSK637Q) /CSM/SS/SSK6-B/SSK637Q.Seq.d/                        553   e-156
SSK558 (SSK558Q) /CSM/SS/SSK5-C/SSK558Q.Seq.d/                        553   e-156
SSJ755 (SSJ755Q) /CSM/SS/SSJ7-C/SSJ755Q.Seq.d/                        553   e-156
SSI859 (SSI859Q) /CSM/SS/SSI8-C/SSI859Q.Seq.d/                        553   e-156
SSI820 (SSI820Q) /CSM/SS/SSI8-A/SSI820Q.Seq.d/                        553   e-156
SSI577 (SSI577Q) /CSM/SS/SSI5-D/SSI577Q.Seq.d/                        553   e-156
SSH825 (SSH825Q) /CSM/SS/SSH8-B/SSH825Q.Seq.d/                        553   e-156
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF140044|AF140044.1 Dictyostelium discoideum putative calmodulin-binding protein CaM-BP15 mRNA, complete cds.   505  0.0  2
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.   109  1e-81  11
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    32  0.005  10
AC004157|AC004157.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38  0.19  6
AA915794|AA915794.1 SWOvL3CA1206SK Onchocerca volvulus infective larva cDNA (SAW94WL-OvL3) Onchocerca volvulus cDNA clone SWOvL3CA1206 5', mRNA sequence.    34  0.87  3
AC094380|AC094380.6 Rattus norvegicus clone CH230-3P6, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    46  0.89  1
AC099950|AC099950.1 Mus musculus clone RP23-19H3, LOW-PASS SEQUENCE SAMPLING.    46  0.89  1
AZ040977|AZ040977.1 RPCI-23-252K15.TV RPCI-23 Mus musculus genomic clone RPCI-23-252K15, genomic survey sequence.    46  0.89  1
BG404893|BG404893.1 sac42f02.y1 Gm-c1062 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1062-2572 5', mRNA sequence.    46  0.89  1
AL929569|AL929569.11 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-325I3.    46  0.89  1
dna update 2003. 7.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ...   242   2e-62
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com...   137   8e-31
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...   125   3e-27
AM398681_1711(AM398681|pid:none) Flavobacterium psychrophilum JI...   110   8e-23
CP000139_262(CP000139|pid:none) Bacteroides vulgatus ATCC 8482, ...   109   1e-22
CP000140_2627(CP000140|pid:none) Parabacteroides distasonis ATCC...   107   9e-22
AE015928_3887(AE015928|pid:none) Bacteroides thetaiotaomicron VP...   104   6e-21
CR626927_3674(CR626927|pid:none) Bacteroides fragilis NCTC 9343,...   101   5e-20
CU207366_2197(CU207366|pid:none) Gramella forsetii KT0803 comple...    93   1e-17
CP000159_1367(CP000159|pid:none) Salinibacter ruber DSM 13855, c...    90   2e-16
protein update 2009. 6. 9
PSORT 

 psg: 0.75  gvh: 0.16  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SSC190 is cyt
5' end seq. ID SSC190F
5' end seq. 
>SSC190F.Seq
GATGGTTTTGGAATTAAAATTTTAATAACAGATACTGGTTATAGAAAATCTCATGAGGTT
TTTAAACATATGAAAATTATTGGTGAATATAATTTCTTAAAGAATAAAAATAATACACAA
GATGATTTTGATCCATTCTTTAAAGATGTAAATGAACAACAAACTGGCCATGGCACATTT
ACATTATCAACTTTGGGTGGTTATAGACCTGGTGTTTTAATAGGTGCAGCATATAATGCA
TCATTTTTATTAGCTGAAACTGAAAATGCTACAAGTGATTTCCCATTGGAGGAAGATAAT
TGGATTGCAGCTATTGAATGGGGTGAAAGCCATGGAGCTCAATTAGTATCCTCTTCATTG
GGTTACGAAAATTGGTATACCTATGCAAATAAGGATGGTCATTTGTCAAAAANNNNAAGA
GTGGCAACAATGGCAGTTAATAAAGGAATGGTGGTAGTAATGGGTGTTGGTAATTCTGGT
GATTTGGGTATGGGAATACCTGCAGATGCAGAATACGTTATATCAGTGGGTGCAATTGAT
TCAAATGGAGAAAGAACTGAATTCTCTTCAATTGGGCCCACTGCTGATGGGAGAATAAA-
---------
Length of 5' end seq. 599
3' end seq. ID SSC190Z
3' end seq. 
>SSC190Z.Seq
----------TTTAATATTTTCAGTATTGGTACAATCTGAAACAGCCTATTTTGGTTTAA
AAACCCATGGTGACCATAATGATTTTATTTTCAAATTAACAGATTCAGAAAAAATTAAAA
AAGCCAGAGATATTTTGTCTGGAAAGGAAACCAATGAAGTTCATGTAATGGGTAGAATTA
GAAAGAGACCTGAAAGCTATAATCCAAAGTATTCCTTTATTCTTGACCCAGATACAATCA
CATTATTATCCATGGCTATTGAAGTTTGTGATGCTTCAACTATTTATGTAGAAGATCACC
TTGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGCCCATGGTCTTCAAAAC
TAACAAGAGAAATTAAAATTTAAACTATAAGAGTAAAANTAAATTACTCATGATTAAATT
TAATCAAATTAAATACTTAAATATTTANTAATAAAGTTTATTAAACAAAAGTTTTTATA
Length of 3' end seq. 469
Connected seq. ID SSC190P
Connected seq. 
>SSC190P.Seq
GATGGTTTTGGAATTAAAATTTTAATAACAGATACTGGTTATAGAAAATCTCATGAGGTT
TTTAAACATATGAAAATTATTGGTGAATATAATTTCTTAAAGAATAAAAATAATACACAA
GATGATTTTGATCCATTCTTTAAAGATGTAAATGAACAACAAACTGGCCATGGCACATTT
ACATTATCAACTTTGGGTGGTTATAGACCTGGTGTTTTAATAGGTGCAGCATATAATGCA
TCATTTTTATTAGCTGAAACTGAAAATGCTACAAGTGATTTCCCATTGGAGGAAGATAAT
TGGATTGCAGCTATTGAATGGGGTGAAAGCCATGGAGCTCAATTAGTATCCTCTTCATTG
GGTTACGAAAATTGGTATACCTATGCAAATAAGGATGGTCATTTGTCAAAAANNNNAAGA
GTGGCAACAATGGCAGTTAATAAAGGAATGGTGGTAGTAATGGGTGTTGGTAATTCTGGT
GATTTGGGTATGGGAATACCTGCAGATGCAGAATACGTTATATCAGTGGGTGCAATTGAT
TCAAATGGAGAAAGAACTGAATTCTCTTCAATTGGGCCCACTGCTGATGGGAGAATAAA-
---------TTTAATATTTTCAGTATTGGTACAATCTGAAACAGCCTATTTTGGTTTAAA
AACCCATGGTGACCATAATGATTTTATTTTCAAATTAACAGATTCAGAAAAAATTAAAAA
AGCCAGAGATATTTTGTCTGGAAAGGAAACCAATGAAGTTCATGTAATGGGTAGAATTAG
AAAGAGACCTGAAAGCTATAATCCAAAGTATTCCTTTATTCTTGACCCAGATACAATCAC
ATTATTATCCATGGCTATTGAAGTTTGTGATGCTTCAACTATTTATGTAGAAGATCACCT
TGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGCCCATGGTCTTCAAAACT
AACAAGAGAAATTAAAATTTAAACTATAAGAGTAAAANTAAATTACTCATGATTAAATTT
AATCAAATTAAATACTTAAATATTTANTAATAAAGTTTATTAAACAAAAGTTTTTATA
Length of connected seq. 1068
Full length Seq ID -
Full length Seq. -
Length of full length seq. -