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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC186
Library SS
(Link to library)
Clone ID SSC186
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSC186P
(Link to Original site)
Representative DNA sequence 
>SSC186 (SSC186Q) /CSM/SS/SSC1-D/SSC186Q.Seq.d/
AGATAAATCAATTTATATATAAAAATGGAGAATTTATTTGAATCATTTACAGAAGAATTG
GAACAAGATTTTCAACTTAGACAAAATATTAAAGAAATTATGACAAAGATTGAACCAATT
GATAGAAAGTTAAGTCAAATGGTTCAAACCTATCATCAAGTAAATAACACAATGAGCTAT
CAACAATTATTAGAGGAAATTCAACCAATGAAAGCACAAATTGATCAATTAAAATTACTC
ATTAAACCAGTACTTTATTATAAATATAGAGATTATTGGAAATTTTCAATCACTCAAATC
TCTTTTAGTTTAATTTTCTCTTATTGGGTTGAAAAGAAATCTTTACTTAAAATTGATCAA
GTTCAATCTATTTTAGGTCTTGATGAAAATAAACCAGGTTCATTCTCACTTGAACTTGAA
GATTATTTAATTGCTTTATGTAATCTTTCAAATGAATTGAGTAGATATTGCTTAAATTGT
GTAATTAAACAAGATTATGAAACTCCATCATTAATTTCAAAATTTATCTCTGATTTATTT
GCTGGTTTTAGATTATTAAATCTTAAAAATGATATTATTAGAAAXXXXXXXXXXATCCGT
AACCACTTTAAGTTCATACATGCCAGGCACATCTCAAGAGACACCTCCATTCATATAACT
CTGATAGAATGGATACGTGCTTTAAACTAGCACAAGATACAATGAGAAATTTCGGTGAAG
ATCAATTAGATATCAAGCAAGAGATTCACGGATTTCGTAGAGTTGAAGAAAGAGATTTGA
CCGACTTCATCGACGGTACTGAAAATCCTGACGGTGACGAACTGCGTACACAATATGGNN
NCGTTGCAGCCGGCCAGCCAAATGAATTTGGCAGTTACGTTTTCACTCAACGGTATGTTC
ACAACTTAAAGAAATGGTATCCTGAACCATTATCAGTTCAGCAAGATACAGTTGGAAGAA
CTAAAAAAGATTCAATTGAAATACCAAGAGATAAACGTCCAATTACTTCACATGTTTCAC
GTACTGATCTAAGTGAAAATGGTAAAGATTTGAAAATAGTTAGGCAATCTCTCCCCTATG
GTCAAATTACTGGTGAAAAAGGTCTGATGTTTATAGCATACGCTTGTAGTTTACATAATA
TTGAAAAACAACTTCAAAGTATGTTTGGTCAATTAGATGGTAAACATGACCTACTCTTAA
AATATACAACACCAGTAACTGGTAGTTTTTATTTTGCACCATCAAAAAAAGAATTATTAG
AATTGTAAATAAACATANATTTATATANTTTNTTTAAATTTTAAAAAAAAAAAAAA
sequence update 1998. 7.30
Translated Amino Acid sequence 
r*INLYIKMENLFESFTEELEQDFQLRQNIKEIMTKIEPIDRKLSQMVQTYHQVNNTMSY
QQLLEEIQPMKAQIDQLKLLIKPVLYYKYRDYWKFSITQISFSLIFSYWVEKKSLLKIDQ
VQSILGLDENKPGSFSLELEDYLIALCNLSNELSRYCLNCVIKQDYETPSLISKFISDLF
AGFRLLNLKNDIIR---

---IRNHFKFIHARHISRDTSIHITLIEWIRALN*hkiq*eisvkin*isskrftdfvel
kkei*ptsstvlkiltvtncvhnmxxlqpasqmnlavtfslngmftt*rngilnhyqfsk
iqleelkkiqlkyqeinvqllhmfhvli*vkmvki*k*lgnlspmvkllvkkv*cl*htl
vvyiilknnfkvclvn*mvnmtys*niqhq*lvvfilhhqkkny*nck*txiyixxlnfk
kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
r*INLYIKMENLFESFTEELEQDFQLRQNIKEIMTKIEPIDRKLSQMVQTYHQVNNTMSY
QQLLEEIQPMKAQIDQLKLLIKPVLYYKYRDYWKFSITQISFSLIFSYWVEKKSLLKIDQ
VQSILGLDENKPGSFSLELEDYLIALCNLSNELSRYCLNCVIKQDYETPSLISKFISDLF
AGFRLLNLKNDIIR---

---IRNHFKFIHARHISRDTSIHITLIEWIRALN*hkiq*eisvkin*isskrftdfvel
kkei*ptsstvlkiltvtncvhnmxxlqpasqmnlavtfslngmftt*rngilnhyqfsk
iqleelkkiqlkyqeinvqllhmfhvli*vkmvki*k*lgnlspmvkllvkkv*cl*htl
vvyiilknnfkvclvn*mvnmtys*niqhq*lvvfilhhqkkny*nck*txiyixxlnfk
kkk

Frame B:
dksiyi*kwriylnhlqknwnkifnldkilkkl*qrlnqlies*vkwfkpiik*itq*ai
nny*rkfnq*khklin*nyslnqyfiinieiignfqslksllv*fsliglkrnlylklik
fnlf*vlmkinqvhshlnlkii*llyvifqmn*vdia*iv*lnkimklhh*fqnlsliyl
lvldy*ilkmille---

---svttlssympgtsqetppfi*l**ngyvl*tstrynekfr*rsiryqardsris*s*
rkrfdrlhrry*ks*r*rtaytiwxrcsrpak*iwqlrfhstvcsqlkemvs*tiissar
yswkn*krfn*ntkr*tsnyftcfty*sk*kw*rfens*aisplwsnyw*krsdvysirl
*ft*y*kttskyvwsirw*t*ptlkiyntsnw*flfctikkriirivnkhxfixfx*ilk
kkk

Frame C:
inqfiykngefi*iiyrrigtrfst*tky*rnydkd*tn**kvksngsnlsssk*hnels
tiirgnstnestn*sikith*tstll*i*rlleifnhsnlf*fnflllg*keift*n*ss
siyfrs**k*trfilt*t*rlfncfm*sfk*ie*illklcn*trl*nsiinfkiyl*fic
wf*iiks*k*yy*k---

---p*pl*vhtcqahlkrhlhsynsdrmdtcfklaqdtmrnfgedqldikqeihgfrrve
erdltdfidgtenpdgdelrtqygxvaagqpnefgsyvftqryvhnlkkwypeplsvqqd
tvgrtkkdsieiprdkrpitshvsrtdlsengkdlkivrqslpygqitgekglmfiayac
slhniekqlqsmfgqldgkhdlllkyttpvtgsfyfapskkellel*inixlyxxfkf*k
kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC186 (SSC186Q) /CSM/SS/SSC1-D/SSC186Q.Seq.d/                       2444   0.0
SLG421 (SLG421Q) /CSM/SL/SLG4-A/SLG421Q.Seq.d/                       1223   0.0
AFI790 (AFI790Q) /CSM/AF/AFI7-D/AFI790Q.Seq.d/                       1209   0.0
SLG596 (SLG596Q) /CSM/SL/SLG5-D/SLG596Q.Seq.d/                       1197   0.0
AFM493 (AFM493Q) /CSM/AF/AFM4-D/AFM493Q.Seq.d/                       1136   0.0
VSB718 (VSB718Q) /CSM/VS/VSB7-A/VSB718Q.Seq.d/                       1066   0.0
SSI695 (SSI695Q) /CSM/SS/SSI6-D/SSI695Q.Seq.d/                       1055   0.0
SLH650 (SLH650Q) /CSM/SL/SLH6-C/SLH650Q.Seq.d/                        805   0.0
VSC548 (VSC548Q) /CSM/VS/VSC5-B/VSC548Q.Seq.d/                        751   0.0
SSD742 (SSD742Q) /CSM/SS/SSD7-B/SSD742Q.Seq.d/                        642   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.  1142  0.0  7
AC116432|AC116432.2 Papio cynocephalus anubis clone RP41-41N12, WORKING DRAFT SEQUENCE, 4 ordered pieces.    42  2e-04  5
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    34  0.010  12
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    34  0.046  12
AE014017|AE014017.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 2 of 2 of the complete genome.    36  0.24  11
AC010486|AC010486.5 Homo sapiens chromosome 5 clone CTD-2331D11, complete sequence.    42  0.42  4
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    40  0.54  12
AY149028|AY149028.1 Plasmodium chabaudi chabaudi strain AS clone YAC101, complete sequence.    42  0.58  3
AJ307410|AJ307410.1 Yarrowia lipolytica complete mitochondrial genome.    32  0.75  7
AC096729|AC096729.3 Homo sapiens BAC clone RP11-63M2 from 4, complete sequence.    40  0.81  7
dna update 2003. 7.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000901_2522(CP000901|pid:none) Yersinia pestis Angola, complet...   228   5e-58
AM286415_1135(AM286415|pid:none) Yersinia enterocolitica subsp. ...   226   2e-57
AH0367(AH0367) conserved hypothetical protein YPO3025 [imported]...   225   2e-57
AE009952_1432(AE009952|pid:none) Yersinia pestis KIM, complete g...   225   2e-57
BX936398_2741(BX936398|pid:none) Yersinia pseudotuberculosis IP3...   225   2e-57
AE017042_2559(AE017042|pid:none) Yersinia pestis biovar Microtus...   225   2e-57
CP000720_1267(CP000720|pid:none) Yersinia pseudotuberculosis IP ...   225   3e-57
CP000826_3446(CP000826|pid:none) Serratia proteamaculans 568, co...   217   8e-55
CP000746_1129(CP000746|pid:none) Actinobacillus succinogenes 130...   210   8e-53
AC0812(AC0812) conserved hypothetical protein STY2683 [imported]...   207   9e-52
protein update 2009. 6. 9
PSORT 

 psg: 0.66  gvh: 0.26  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSC186 is nuc
5' end seq. ID SSC186F
5' end seq. 
>SSC186F.Seq
AGATAAATCAATTTATATATAAAAATGGAGAATTTATTTGAATCATTTACAGAAGAATTG
GAACAAGATTTTCAACTTAGACAAAATATTAAAGAAATTATGACAAAGATTGAACCAATT
GATAGAAAGTTAAGTCAAATGGTTCAAACCTATCATCAAGTAAATAACACAATGAGCTAT
CAACAATTATTAGAGGAAATTCAACCAATGAAAGCACAAATTGATCAATTAAAATTACTC
ATTAAACCAGTACTTTATTATAAATATAGAGATTATTGGAAATTTTCAATCACTCAAATC
TCTTTTAGTTTAATTTTCTCTTATTGGGTTGAAAAGAAATCTTTACTTAAAATTGATCAA
GTTCAATCTATTTTAGGTCTTGATGAAAATAAACCAGGTTCATTCTCACTTGAACTTGAA
GATTATTTAATTGCTTTATGTAATCTTTCAAATGAATTGAGTAGATATTGCTTAAATTGT
GTAATTAAACAAGATTATGAAACTCCATCATTAATTTCAAAATTTATCTCTGATTTATTT
GCTGGTTTTAGATTATTAAATCTTAAAAATGATATTATTAGAAA----------
Length of 5' end seq. 584
3' end seq. ID SSC186Z
3' end seq. 
>SSC186Z.Seq
----------ATCCGTAACCACTTTAAGTTCATACATGCCAGGCACATCTCAAGAGACAC
CTCCATTCATATAACTCTGATAGAATGGATACGTGCTTTAAACTAGCACAAGATACAATG
AGAAATTTCGGTGAAGATCAATTAGATATCAAGCAAGAGATTCACGGATTTCGTAGAGTT
GAAGAAAGAGATTTGACCGACTTCATCGACGGTACTGAAAATCCTGACGGTGACGAACTG
CGTACACAATATGGNNNCGTTGCAGCCGGCCAGCCAAATGAATTTGGCAGTTACGTTTTC
ACTCAACGGTATGTTCACAACTTAAAGAAATGGTATCCTGAACCATTATCAGTTCAGCAA
GATACAGTTGGAAGAACTAAAAAAGATTCAATTGAAATACCAAGAGATAAACGTCCAATT
ACTTCACATGTTTCACGTACTGATCTAAGTGAAAATGGTAAAGATTTGAAAATAGTTAGG
CAATCTCTCCCCTATGGTCAAATTACTGGTGAAAAAGGTCTGATGTTTATAGCATACGCT
TGTAGTTTACATAATATTGAAAAACAACTTCAAAGTATGTTTGGTCAATTAGATGGTAAA
CATGACCTACTCTTAAAATATACAACACCAGTAACTGGTAGTTTTTATTTTGCACCATCA
AAAAAAGAATTATTAGAATTGTAAATAAACATANATTTATATANTTTNTTTAAATTTTAA
AAAAAAAAAAAA
Length of 3' end seq. 722
Connected seq. ID SSC186P
Connected seq. 
>SSC186P.Seq
AGATAAATCAATTTATATATAAAAATGGAGAATTTATTTGAATCATTTACAGAAGAATTG
GAACAAGATTTTCAACTTAGACAAAATATTAAAGAAATTATGACAAAGATTGAACCAATT
GATAGAAAGTTAAGTCAAATGGTTCAAACCTATCATCAAGTAAATAACACAATGAGCTAT
CAACAATTATTAGAGGAAATTCAACCAATGAAAGCACAAATTGATCAATTAAAATTACTC
ATTAAACCAGTACTTTATTATAAATATAGAGATTATTGGAAATTTTCAATCACTCAAATC
TCTTTTAGTTTAATTTTCTCTTATTGGGTTGAAAAGAAATCTTTACTTAAAATTGATCAA
GTTCAATCTATTTTAGGTCTTGATGAAAATAAACCAGGTTCATTCTCACTTGAACTTGAA
GATTATTTAATTGCTTTATGTAATCTTTCAAATGAATTGAGTAGATATTGCTTAAATTGT
GTAATTAAACAAGATTATGAAACTCCATCATTAATTTCAAAATTTATCTCTGATTTATTT
GCTGGTTTTAGATTATTAAATCTTAAAAATGATATTATTAGAAA----------ATCCGT
AACCACTTTAAGTTCATACATGCCAGGCACATCTCAAGAGACACCTCCATTCATATAACT
CTGATAGAATGGATACGTGCTTTAAACTAGCACAAGATACAATGAGAAATTTCGGTGAAG
ATCAATTAGATATCAAGCAAGAGATTCACGGATTTCGTAGAGTTGAAGAAAGAGATTTGA
CCGACTTCATCGACGGTACTGAAAATCCTGACGGTGACGAACTGCGTACACAATATGGNN
NCGTTGCAGCCGGCCAGCCAAATGAATTTGGCAGTTACGTTTTCACTCAACGGTATGTTC
ACAACTTAAAGAAATGGTATCCTGAACCATTATCAGTTCAGCAAGATACAGTTGGAAGAA
CTAAAAAAGATTCAATTGAAATACCAAGAGATAAACGTCCAATTACTTCACATGTTTCAC
GTACTGATCTAAGTGAAAATGGTAAAGATTTGAAAATAGTTAGGCAATCTCTCCCCTATG
GTCAAATTACTGGTGAAAAAGGTCTGATGTTTATAGCATACGCTTGTAGTTTACATAATA
TTGAAAAACAACTTCAAAGTATGTTTGGTCAATTAGATGGTAAACATGACCTACTCTTAA
AATATACAACACCAGTAACTGGTAGTTTTTATTTTGCACCATCAAAAAAAGAATTATTAG
AATTGTAAATAAACATANATTTATATANTTTNTTTAAATTTTAAAAAAAAAAAAAA
Length of connected seq. 1306
Full length Seq ID -
Full length Seq. -
Length of full length seq. -