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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC182
Library SS
(Link to library)
Clone ID SSC182
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04652-1
Original site URL
Representative seq. ID SSC182E
(Link to Original site)
Representative DNA sequence 
>SSC182 (SSC182Q) /CSM/SS/SSC1-D/SSC182Q.Seq.d/
AAAAAAAAAAATCAAAGAAAAAGTCAAATGGAGGATATTGAAATAAATTTATCTAAAGAC
AAAAAAAAAGAGTTTACTCAACTTTTAGAAAGTACAACACCAACTGATAAACTTGCTTTA
TTTTTTATTACAAGAACAAAGAGTACTTATTTCAAATCAATTTACAAGTAATTTTAAAAA
ATTTTTAAAAGATCAAAATATTGAAGAATACAATAAAGGTTGTCAATCAATTACAACTCA
ATTATCAAGTATAGGTGAAGAGATTATTCAAATACAAGAATCATTATCAACAACAAATCC
TGAATGGTCAAAGATTATATCTNAAGTTAGAGAGAATGAAAAAACAAAGTTTATATTAAC
AGCACAAAATCAAGTTTTAAAAGTAGAGATTGATAATAGCCAACAATTAACATCAAATAA
ACCAAATGAAAAACCAGCAGCAGGTAGTTGTTTCTATGAACATATTGAAAAATGTGAAAG
TCAAATTAATGAAAATAGATTAAAGATTAATGATTGTATAGATACTATCAATGAAAAGTT
AGAAATTTTAAAATATGATTTATGATTTAAATGAAGCATTCGCTGGTTTAAATACTGATA
CAAGTAAAGAAAATCAATCTAATCATTCTCATCATCACCATGATCATAAATAAAAT
sequence update 1999. 3. 9
Translated Amino Acid sequence 
kkkikekvkwrilk*iylktkkksllnf*KVQHQLINLLYFLLQEQRVLISNQFTSNFKK
FLKDQNIEEYNKGCQSITTQLSSIGEEIIQIQESLSTTNPEWSKIISXVRENEKTKFILT
AQNQVLKVEIDNSQQLTSNKPNEKPAAGSCFYEHIEKCESQINENRLKINDCIDTINEKL
EILKYDL*fk*sirwfky*yk*rksi*sfsssp*s*ik
Translated Amino Acid sequence (All Frames) 
Frame A:
kkknqrksqmedieinlskdkkkeftqllesttptdklalffitrtkstyfksiyk*f*k
ifkrsky*riq*rlsinynsiikyr*rdysntriiinnks*mvkdyixs*re*knkvyin
stkssfksrd***ptinik*tk*ktssr*lfl*ty*km*ksn**k*ikd**lyryyq*kv
rnfki*fmi*mkhslv*iliqvkkinliiliitmiink


Frame B:
kkkikekvkwrilk*iylktkkksllnf*KVQHQLINLLYFLLQEQRVLISNQFTSNFKK
FLKDQNIEEYNKGCQSITTQLSSIGEEIIQIQESLSTTNPEWSKIISXVRENEKTKFILT
AQNQVLKVEIDNSQQLTSNKPNEKPAAGSCFYEHIEKCESQINENRLKINDCIDTINEKL
EILKYDL*fk*sirwfky*yk*rksi*sfsssp*s*ik


Frame C:
kkkskkksnggy*nkfi*rqkkrvystfrkyntn**tcfifyyknkeylfqinlqvilkn
f*kikilkntikvvnqlqlnyqv*vkrlfkyknhyqqqilngqrlylklermkkqsly*q
hkikf*k*rliiann*hqinqmknqqqvvvsmnilknvkvklmkid*rlmiv*ilsmks*
kf*nmiydlneafaglntdtskenqsnhshhhhdhk*n
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC182 (SSC182Q) /CSM/SS/SSC1-D/SSC182Q.Seq.d/                       1219   0.0
VSD560 (VSD560Q) /CSM/VS/VSD5-C/VSD560Q.Seq.d/                        230   2e-59
SSL755 (SSL755Q) /CSM/SS/SSL7-C/SSL755Q.Seq.d/                         42   0.010
SSL754 (SSL754Q) /CSM/SS/SSL7-C/SSL754Q.Seq.d/                         42   0.010
VFN561 (VFN561Q) /CSM/VF/VFN5-C/VFN561Q.Seq.d/                         38   0.16
VFE376 (VFE376Q) /CSM/VF/VFE3-D/VFE376Q.Seq.d/                         38   0.16
SSM869 (SSM869Q) /CSM/SS/SSM8-C/SSM869Q.Seq.d/                         38   0.16
SSM532 (SSM532Q) /CSM/SS/SSM5-B/SSM532Q.Seq.d/                         38   0.16
SSM275 (SSM275Q) /CSM/SS/SSM2-D/SSM275Q.Seq.d/                         38   0.16
SSL143 (SSL143Q) /CSM/SS/SSL1-B/SSL143Q.Seq.d/                         38   0.16
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   404   0.0    22
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    34   1e-13  21
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   6e-10  18
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   1e-08  17
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    38   3e-08  17
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    42   7e-08  18
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    36   1e-07  14
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   2e-07  22
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             40   2e-07  25
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2.    44   2e-07  15
dna update 2004. 3. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ446917_1(DQ446917|pid:none) Arabidopsis thaliana clone pENTR22...    43   0.009
BC166328_1(BC166328|pid:none) Xenopus tropicalis hypothetical pr...    35   2.5
AB005245_3(AB005245|pid:none) Arabidopsis thaliana genomic DNA, ...    35   2.5
CP001186_1856(CP001186|pid:none) Bacillus cereus G9842, complete...    33   5.6
(Q5CZC0) RecName: Full=Fibrous sheath-interacting protein 2;           33   7.3
(Q5HPA2) RecName: Full=Extracellular matrix-binding protein ebh;...    33   7.3
(Q8CP76) RecName: Full=Extracellular matrix-binding protein ebh;...    33   7.3
CP000029_988(CP000029|pid:none) Staphylococcus epidermidis RP62A...    33   7.3
FN357667_7(FN357667|pid:none) Schistosoma mansoni genome sequenc...    33   7.3
CR940348_84(CR940348|pid:none) Theileria annulata strain Ankara ...    33   7.3
protein update 2009. 7. 6
PSORT 

 psg: 0.88  gvh: 0.44  alm: 0.44  top: 0.43  tms: 0.00  mit: 0.29  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSC182 is cyt
5' end seq. ID SSC182F
5' end seq. 
>SSC182F.Seq
AAAAAAAAAAATCAAAGAAAAAGTCAAATGGAGGATATTGAAATAAATTTATCTAAAGAC
AAAAAAAAAGAGTTTACTCAACTTTTAGAAAGTACAACACCAACTGATAAACTTGCTTTA
TTTTTTAATTTACAAGAACAAAGAGTACTTATTTCAAATCAATTTACAAGTAATTTTAAA
AAATTTTTAAAAGATCAAAATATTGAAGAATACAATAAAGGTTGTCAATCAATTACAACT
CAATTATCAAGTATAGGTGAAGAGATTATTCAAATACAAGAATCATTATCAACAACAAAT
CCTGAATGGTCAAAGATTATATCTTAAGTTAGAGAGAATGAAAAAACAAAGTTTATATTA
ACAGCACAAAATCAAGTTTTAAAAGTAGAGATTGATAATAGCCAACAATTAACATCAAAT
AAACCAAATGAAAAACCAGCAGCAGGTAGTTGTTTCTATGAACATATTGAAAAATGTGAA
AGTCAAATTAATGAAAATAGATTAAAGATTAATGATTGTATAGATACTATCAATGAAAAG
TTAGAAATTTTAAAATATGATTTA----------
Length of 5' end seq. 564
3' end seq. ID SSC182Z
3' end seq. 
>SSC182Z.Seq
----------TTACAAGAACAAAGAGTACTTATTTCAAATCAATTTACAAGTAATTTTAA
AAAATTTTTAAAAGATCAAAATATTGAAGAATACAATAAAGGTTGTCAATCAATTACAAC
TCAATTATCAAGTATAGGTGAAGAGATTATTCAAATACAAGAATCATTATCAACAACAAA
TCCTGAATGGTCAAAGATTATATCTGAAGTTAGAGAGAATGAAAAAACAAAGTTTATATT
AACAGCACAAAATCAAGTTTTAAAAGTAGAGATTGATAATAGCCAACAATTAACATCAAA
TAAACCAAATGAAAAACCAGCAGCAGGTAGTTGTTTCTATGAACATATTGAAAAATGTGA
AAGTCAAATTAATGAAAATAGATTAAAGATTAATGATTGTATAGATACTATCAATGAAAA
GTTAGAAATTTTAAAATATGATTTAAATGAAGCATTCGCTGGTTTAAATACTGATACAAG
TAAAGAAAATCAATCTAATCATTCTCATCATCACCATGATCATAAATAAAATTTTTGTTC
Length of 3' end seq. 530
Connected seq. ID SSC182P
Connected seq. 
>SSC182P.Seq
AAAAAAAAAAATCAAAGAAAAAGTCAAATGGAGGATATTGAAATAAATTTATCTAAAGAC
AAAAAAAAAGAGTTTACTCAACTTTTAGAAAGTACAACACCAACTGATAAACTTGCTTTA
TTTTTTAATTTACAAGAACAAAGAGTACTTATTTCAAATCAATTTACAAGTAATTTTAAA
AAATTTTTAAAAGATCAAAATATTGAAGAATACAATAAAGGTTGTCAATCAATTACAACT
CAATTATCAAGTATAGGTGAAGAGATTATTCAAATACAAGAATCATTATCAACAACAAAT
CCTGAATGGTCAAAGATTATATCTTAAGTTAGAGAGAATGAAAAAACAAAGTTTATATTA
ACAGCACAAAATCAAGTTTTAAAAGTAGAGATTGATAATAGCCAACAATTAACATCAAAT
AAACCAAATGAAAAACCAGCAGCAGGTAGTTGTTTCTATGAACATATTGAAAAATGTGAA
AGTCAAATTAATGAAAATAGATTAAAGATTAATGATTGTATAGATACTATCAATGAAAAG
TTAGAAATTTTAAAATATGATTTA----------TTACAAGAACAAAGAGTACTTATTTC
AAATCAATTTACAAGTAATTTTAAAAAATTTTTAAAAGATCAAAATATTGAAGAATACAA
TAAAGGTTGTCAATCAATTACAACTCAATTATCAAGTATAGGTGAAGAGATTATTCAAAT
ACAAGAATCATTATCAACAACAAATCCTGAATGGTCAAAGATTATATCTGAAGTTAGAGA
GAATGAAAAAACAAAGTTTATATTAACAGCACAAAATCAAGTTTTAAAAGTAGAGATTGA
TAATAGCCAACAATTAACATCAAATAAACCAAATGAAAAACCAGCAGCAGGTAGTTGTTT
CTATGAACATATTGAAAAATGTGAAAGTCAAATTAATGAAAATAGATTAAAGATTAATGA
TTGTATAGATACTATCAATGAAAAGTTAGAAATTTTAAAATATGATTTAAATGAAGCATT
CGCTGGTTTAAATACTGATACAAGTAAAGAAAATCAATCTAATCATTCTCATCATCACCA
TGATCATAAATAAAATTTTTGTTC
Length of connected seq. 1094
Full length Seq ID SSC182E
Full length Seq. 
>SSC182E.Seq
AAAAAAAAAAATCAAAGAAAAAGTCAAATGGAGGATATTGAAATAAATTTATCTAAAGAC
AAAAAAAAAGAGTTTACTCAACTTTTAGAAAGTACAACACCAACTGATAAACTTGCTTTA
TTTTTTATTACAAGAACAAAGAGTACTTATTTCAAATCAATTTACAAGTAATTTTAAAAA
ATTTTTAAAAGATCAAAATATTGAAGAATACAATAAAGGTTGTCAATCAATTACAACTCA
ATTATCAAGTATAGGTGAAGAGATTATTCAAATACAAGAATCATTATCAACAACAAATCC
TGAATGGTCAAAGATTATATCTNAAGTTAGAGAGAATGAAAAAACAAAGTTTATATTAAC
AGCACAAAATCAAGTTTTAAAAGTAGAGATTGATAATAGCCAACAATTAACATCAAATAA
ACCAAATGAAAAACCAGCAGCAGGTAGTTGTTTCTATGAACATATTGAAAAATGTGAAAG
TCAAATTAATGAAAATAGATTAAAGATTAATGATTGTATAGATACTATCAATGAAAAGTT
AGAAATTTTAAAATATGATTTATGATTTAAATGAAGCATTCGCTGGTTTAAATACTGATA
CAAGTAAAGAAAATCAATCTAATCATTCTCATCATCACCATGATCATAAATAAAAT
Length of full length seq. 656